Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m11f
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    29   0.73 
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    28   1.3  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   5.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.0  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
 Frame = +3

Query: 216 FERIEGTSWHWPLLLSVVFL--NICLPSLVLS-------YGVFLVHLAELDVPLWQGFGA 368
           F  +  T W W  L   VFL  N+    +V+        +G+  +    L VPL +    
Sbjct: 32  FRLLRNTKWSWTHL-QYVFLAGNLIFACIVIESPGFWGKFGIACLLAIALTVPLTRQIFF 90

Query: 369 TTIFIVTYGLSQCWCRDAADSWGGTIGYRVMAAI 470
             I I+T+ +    CR   + W   I  RV+  +
Sbjct: 91  PAIVIITWAILFYSCRFIPERWRPPIWVRVLPTL 124


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 237 TCPLFVRIPFRLPSSCIFRNTHTFFFVVITLHVLITVHCLKFF 109
           T P+   +PFR  SS      H   F+ IT+  ++ V    FF
Sbjct: 104 TSPIIRTLPFRSSSSSSSNYRHNLDFLEITVFAVVPVGIASFF 146


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 556 G*GHL*YQLKWMPLCLKHTIRVWD*YEEHASQAKRL 663
           G G L  +  W PL +++  +VW   + H  + KR+
Sbjct: 2   GGGDLNMKKSWHPLLMRNQEKVWKDEQAHKEEMKRV 37


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 527 YLIGHKCTNKKSYYNCPQSYSRHYSISYCSSPRV 426
           + +GHKC +  SY  C  S  +       S PR+
Sbjct: 360 HFLGHKCNSCHSYNTCISSIYKPLDHPQVSIPRL 393


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 107 LKNFKQ*TVIKTCSVITTKKNVCVFRKMQDDGSLNGIRTNRGHV 238
           LKN     ++K      T  ++C+  +  ++GSL  I  N G +
Sbjct: 60  LKNLDHPNIVKYRGSYQTNDSLCIILEYCENGSLRSICKNFGKI 103


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 646 KHVPRINPRRESYVSNTTAST*AD-IRDDPNPPRM 545
           K +P+IN +  S++SNT      + + +D + PR+
Sbjct: 62  KRIPKINTQMRSFISNTGLDVDVNSVINDSDGPRL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,466
Number of Sequences: 5004
Number of extensions: 66106
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)