Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16m10f
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 211 4e-55
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 34 0.15
07_03_0525 - 19044978-19045508 29 3.3
03_02_0723 + 10694128-10694793 29 3.3
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 29 4.4
05_07_0109 - 27738333-27738434,27739046-27739144,27739798-277399... 29 5.8
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 29 5.8
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 28 7.6
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 28 7.6
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 28 7.6
>04_04_1340 + 32766773-32767582
Length = 269
Score = 211 bits (516), Expect = 4e-55
Identities = 114/212 (53%), Positives = 149/212 (70%), Gaps = 10/212 (4%)
Frame = +3
Query: 90 MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 266
MSG+ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR IL KI+ K MG
Sbjct: 1 MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60
Query: 267 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD---- 431
E M+ ++FSLAEAK+ GD VVLQ+V A +++RS ++NVAGV LP F + D
Sbjct: 61 EAMRASSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAG 120
Query: 432 ----GSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVN 599
+ + L GLARGGQQ+A + A+++LVELASLQTSF+TLDE IK TNRRVN
Sbjct: 121 SAGPSNASPSLTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVN 180
Query: 600 AIEHVIIPRLERTLAYIISELDELEREEFYRL 695
A+E+V+ PRLE T++YI ELDELERE+F+RL
Sbjct: 181 ALENVVKPRLENTISYIKGELDELEREDFFRL 212
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +3
Query: 177 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 350
+G+LK K DALQ R +L + ++T T+ + ++ + +SL K NQ++ +++
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSL---KHIRSKKNQLLFESI 151
Query: 351 TKAQIKIRSKKD 386
++ Q K +S K+
Sbjct: 152 SELQKKEKSLKN 163
>07_03_0525 - 19044978-19045508
Length = 176
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 156 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAFSLA 299
LAGA G G +KK+A ++VR R+ I+S I T L +V+K + F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160
>03_02_0723 + 10694128-10694793
Length = 221
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 710 QEEDYQGQGRSEKKAALLAAGNDLRGG 790
QEEDY G+ +E++AAL A RGG
Sbjct: 127 QEEDYGGELTNEEEAALAARSVSRRGG 153
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 29.1 bits (62), Expect = 4.4
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Frame = +3
Query: 123 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAE 302
SRG ++ L G L + D L V F +S I L +K + E
Sbjct: 69 SRGLSDELEQLLKGIAMMKELTLRTRDYL-VSFGECMSTRIFAALLNKLGVKARQYDAFE 127
Query: 303 AKF-TTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESY-QDGSDTYELAGLARGGQ 476
F TT DF + T I R D V G +PI + G T + L RGG
Sbjct: 128 IGFITTDDFTNADILEATYPAIAKRLHGDWVTGPAIPIVTGFLGKGWKTGAITTLGRGGS 187
Query: 477 QL 482
L
Sbjct: 188 DL 189
>05_07_0109 -
27738333-27738434,27739046-27739144,27739798-27739993,
27740083-27740308,27740585-27740770,27741029-27741305
Length = 361
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 620 SPAGTYTRVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKKAALLAAGNDLR 784
SPA + VH G G Q + G ++ YQGQ + AGN LR
Sbjct: 137 SPAQATSAVHTNHRGLDQGDGATLDQNNNGAQDKYQGQSERCETQMTKEAGNHLR 191
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 297 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 386
AE+KF G N ++QN+T+ ++ ++ KKD
Sbjct: 25 AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 90 MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 263
M K +LA+F + A + IK R A V+ G + +A+ + + +KII +L+
Sbjct: 95 MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154
Query: 264 GEV 272
G V
Sbjct: 155 GNV 157
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 276 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYE 449
K+A S + TTGD N +L+ ++ +D GVT+ E + +E
Sbjct: 205 KDAEASASAPPLTTGDGNSDILEETPSTSSELPDNQDYETGVTMSFDEQLKAFGSCHE 262
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 608 ARNHSPAGTYTRVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQG 736
A + PA + RVH + G + G P E+ +EE+++G G
Sbjct: 11 ATDPDPAPSPLRVHGIGIGSHASRGTAPRGEEEEEEEEWRGDG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,988,965
Number of Sequences: 37544
Number of extensions: 423868
Number of successful extensions: 1041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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