Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m10f
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 373 GPRRTMLLVSPSQSLSHTRMVLIPTSWLVWPVVGSSL 483
           GP R +    P++ L H     IP  WLV+P    SL
Sbjct: 16  GPPRLLGWNVPAEELIH-----IPEHWLVYPEPNPSL 47


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 698 EDPGQEEDYQGQGRSEKKAAL 760
           E+  +EED +GQ  +EK+  L
Sbjct: 284 EENEEEEDGRGQSEAEKRLKL 304


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 440 YLRVGWFGPW 469
           Y RV W GPW
Sbjct: 55  YERVEWSGPW 64


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 275 HHFTHKGFSLNDFAQDHTEPHLKGI 201
           HH THKG  +      HT   L G+
Sbjct: 572 HHLTHKGKPIRMRIGIHTGMVLAGV 596


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 335 CPTKCYQGSNQD*VQEGQCCW 397
           C   C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,517
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)