Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m07r
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    40   6e-04
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    30   0.49 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    28   2.0  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   2.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.6  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   8.1  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
 Frame = -2

Query: 618 YPRRVGSCGVTRVTDFTAGVTAPPAPRTDTHLRVLGTGLDQDYTSGEMVMFRCDTG-LSA 442
           YP  +GS  +T V D T G  +     TD      G        S + V F  + G +  
Sbjct: 486 YPATLGSKKITNVRDLTTGYDSSS---TD------GKATLPVSKSSDNVTFELENGEVIM 536

Query: 441 CVRTSGTEPKLKYY--TELVCRADTVSEQEEMKSKLK-EIVHPSK 316
            +RTSGTEPKLK+Y         D++    E+K  +K E  HP +
Sbjct: 537 TIRTSGTEPKLKFYICARGHSLEDSIKNATEVKQAIKSEWFHPQQ 581


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 456 TGLSACVRTSGTEPKLKYYTELVCRADTVSEQEEMKSKLKEIVH 325
           TG  A VR+SGTE  ++ Y E    A +  E E++  ++ E++H
Sbjct: 503 TGGRAFVRSSGTEDAVRVYAE----ASSRGESEDLALRIVELLH 542


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 735 TYPCGLTRAPTTSKNVFLPPAAGTV 661
           TYP G+   PT ++N F PP    +
Sbjct: 323 TYPAGMGPNPTAARNGFYPPTPAQI 347


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 744 GGVTYPCGLTRAPTTSKNV-FLPPAAGTVSDNVNRRLSAPRPQYPRRVGSCGVTRVTDFT 568
           G V Y      + TTS  V  + P AGT+++ +     A    +P    + G   V + T
Sbjct: 360 GSVGYTSTFPASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPT 419

Query: 567 AG 562
           AG
Sbjct: 420 AG 421



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 744 GGVTYPCGLTRAPTTSKNV-FLPPAAGTVSDNVNRRLSAPRPQYPRRVGSCGVTRVTDFT 568
           G V Y      + TTS  V  + P AGT+++ +     A    +P    + G   V + T
Sbjct: 640 GSVGYTSTFPASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPT 699

Query: 567 AG 562
           AG
Sbjct: 700 AG 701



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 744 GGVTYPCGLTRAPTTSKNV-FLPPAAGTVSDNVNRRLSAPRPQYPRRVGSCGVTRVTDFT 568
           G  T+      + TTS  V  + P AGT+++ +     A    +P    + G   V + T
Sbjct: 500 GSKTFTSTFPASGTTSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPT 559

Query: 567 AG 562
           AG
Sbjct: 560 AG 561


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 490 HERRDGDVPLRHGAERVRAHQRDRAQAQVLHRAGLPGRHRQ*TRGNEI 347
           + +R GD+PLR+G  RV  H RD     + +R   P  H+    G+ I
Sbjct: 423 YHKRAGDIPLRYG-WRVERHIRD-GDVVIFNRQ--PSLHKMSMMGHRI 466


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 786 SKRNG--LLLHGGNRQGGVTYPCGLTRAPTTSKN 691
           S++NG  ++LHG N Q  +   CGL    +++ N
Sbjct: 103 SQKNGELIVLHGINHQAAMLTACGLFMVTSSNTN 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,683
Number of Sequences: 5004
Number of extensions: 56190
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)