Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16m07f
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 157 2e-39
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 41 2e-04
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 33 0.061
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 33 0.061
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 5.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 7.0
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 7.0
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 157 bits (381), Expect = 2e-39
Identities = 81/176 (46%), Positives = 102/176 (57%)
Frame = +1
Query: 235 DVKLDAAVNAWLKHDKNPTTRQEVLDDIKNSRWEKLKKTMLHRQKFGTAGLRGRMGAGYT 414
D L V+ W K D++ TTR EV IK + LK+ M R FGT+GLR +GAG+
Sbjct: 2 DPILQELVDEWFKLDQDETTRNEVSQLIKAEDYATLKQIMHPRIGFGTSGLRAEIGAGFA 61
Query: 415 CMNDVVVLQTAQGICSYIQKVSNNAQIKNGIVVGFDGRHQSKRFAELTTKVFISSSIPVH 594
MN + V+Q +QG Y+ + +A K G+V+G D RH+S FA LT VF+ +
Sbjct: 62 RMNCLTVIQASQGFAEYLLQTVPSAA-KLGVVIGHDHRHKSNTFARLTAAVFLQKGFKTY 120
Query: 595 LFSMVCPTPLVSFGTIMYGAAAGVMVTASHNPKEDNGYKVYWSNGSQIISPHDDHI 762
F + TPLV F G AAGVM+TASHNP NGYKVYW NG II PHD I
Sbjct: 121 FFDHLVHTPLVPFAVKTLGTAAGVMITASHNPAAYNGYKVYWGNGCAIIPPHDKGI 176
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 649 GAAAGVMVTASHNPKEDNGYKVYWSNGSQIISPHDD 756
G GVM+TASHNP EDNG K+ ++G + +D
Sbjct: 41 GKTIGVMITASHNPVEDNGVKIIDADGGMLAMEWED 76
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 32.7 bits (71), Expect = 0.061
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 505 IVVGFDGRHQSKRFAELTTKVFISSSIPVHLFSM--VCPTPLVSFGTIMYGAAAGVMVTA 678
+VVG DGR+ + ++ + + + + TP S Y G+++TA
Sbjct: 53 LVVGGDGRYFNFHAIQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKLTGGIILTA 112
Query: 679 SHN---PKEDNGYKVYWSNG 729
SHN PK D G K NG
Sbjct: 113 SHNAGGPKNDFGIKYNLGNG 132
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 32.7 bits (71), Expect = 0.061
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 643 MYGAAAGVMVTASHNPKEDNGYKV 714
++G G+MVTASHN +NG K+
Sbjct: 65 LHGQPVGLMVTASHNASSENGLKI 88
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 475 PFVYMNIFLEQSVKPQHHSYT--CIQHPFVHVDQPCQTFGDVASSSLISPILNF*YHP 308
P ++NI + + H+ Y + P +D PC D SSS+I P Y+P
Sbjct: 87 PSFHVNINAAEFIPKSHNGYAPKSMNPPPEQLDSPCYPHFDQDSSSVIYPSPPSTYYP 144
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 713 FIGRTVRKLYRLMTTTYW 766
F+G + K+YRL+TT W
Sbjct: 1303 FLGVPLHKIYRLLTTKLW 1320
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 682 HNPKEDNGYKVYWSNGSQIISPHDDHILD 768
HNP + Y V W NGS HI D
Sbjct: 50 HNPSWSHPYSVTWLNGSSYYGLAISHIDD 78
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 259 NAWLKHDKNPTTRQEVLDDIKNSRWEKLKKTMLHRQKFGTAGLRGRMGAG 408
N W + K+P+ + +V + K WE +K M Q + G G+G
Sbjct: 556 NNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSG 605
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 1 RKLRMMRNDEIYFVSNVNLSV 63
++++ + +DE+Y +SN NLS+
Sbjct: 415 QRMKTVLDDELYTISNTNLSI 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,701
Number of Sequences: 5004
Number of extensions: 69156
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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