Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m07f
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521...    40   0.002
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581...    39   0.004
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117...    33   0.26 
01_06_0176 - 27233553-27234588,27235629-27235768                       33   0.26 
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...    29   4.2  
01_05_0514 - 22876264-22878567                                         29   5.5  

>07_01_0688 -
           5211484-5211626,5211730-5211826,5211930-5212105,
           5212240-5212631,5212712-5212960,5213046-5213188,
           5213283-5213402,5214491-5214835
          Length = 554

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 649 GAAAGVMVTASHNPKEDNGYKVYWSNGSQI 738
           GAA GV++TASHNP  DNG K+  ++G  +
Sbjct: 64  GAAVGVVITASHNPVRDNGVKIVDADGGML 93


>10_02_0145 -
           5817684-5817751,5817850-5817955,5818145-5818222,
           5818334-5818380,5818476-5818557,5818688-5818829,
           5819027-5819142,5819244-5819318,5819413-5819531,
           5820569-5820636,5820739-5820803,5820887-5820968,
           5821462-5821514,5821589-5821711,5821986-5822054,
           5822581-5822649,5822735-5822786,5823423-5823475,
           5823562-5823654,5823762-5823806,5824616-5824777
          Length = 588

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
 Frame = +1

Query: 427 VVVLQTAQGICSYIQKVSNNAQ----IKNGIVVGFDGRHQSKRFAELTTKVFISSSIPVH 594
           V V Q    + ++IQ + N+      +   +V+G DGR+ +K  A++ TK+   + +   
Sbjct: 55  VKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGKI 114

Query: 595 LFSM--VCPTPLVSFGTIMYGAAAGVMVTASHN---PKEDNGYKVYWSNGSQIISPHDDH 759
           L     +  TP VS       A  G +++ASHN   P  D G K  +S+G     P  + 
Sbjct: 115 LVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSG----QPAPET 170

Query: 760 ILDEI 774
           I D+I
Sbjct: 171 ITDQI 175


>03_05_0898 +
           28610123-28610203,28611190-28611271,28611666-28611721,
           28612253-28612366,28612484-28612546,28612633-28612752,
           28612850-28612950,28613097-28613156,28613243-28613342,
           28613421-28613575,28613661-28613756,28614269-28614403,
           28614510-28614573,28614648-28614729,28615038-28615213,
           28615302-28615378,28615637-28615769,28615939-28616055,
           28616394-28616398,28616564-28616684,28616711-28617751
          Length = 992

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
 Frame = +1

Query: 337 KLKKTMLHRQKFGTAGLRGRMGAGYTCMNDVVVLQTAQGICSYIQKVSNNA---QIKNG- 504
           K   T    QK GT+GLR +          V V Q    + +++Q   N     ++K   
Sbjct: 8   KKATTPFDGQKPGTSGLRKK----------VTVFQQPHYLQNFVQSTFNALPADKVKGAT 57

Query: 505 IVVGFDGRHQSKRFAELTTKVFISSSI-PVHL-FSMVCPTPLVS------FGTIMYGAAA 660
           IVV  DGR+ SK   ++ TK+  ++ +  V +  + +  TP VS       G     A  
Sbjct: 58  IVVSGDGRYFSKDAVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATG 117

Query: 661 GVMVTASHN---PKEDNGYKVYWSNGSQIISPHDDHILDEI 774
             ++TASHN   P ED G K    NG     P  + + D+I
Sbjct: 118 AFILTASHNPGGPTEDFGIKYNMENG----GPAPESVTDKI 154


>01_06_0176 - 27233553-27234588,27235629-27235768
          Length = 391

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 286 PTTRQEVLDDIKNSRWEKLKKTMLHRQKFGTAGLR---GRMGAGYTCM 420
           PT R++V DD++   W+ LK ++  R     A LR   GR+GAG  C+
Sbjct: 145 PTFRRDVTDDLRFLAWDSLKGSV--RFAGALAALRAATGRLGAGSVCV 190


>06_01_0977 +
           7585817-7585970,7586057-7586146,7586500-7586702,
           7587274-7587452,7587913-7587991,7588403-7588537,
           7588651-7588800,7588887-7588997,7589084-7590004,
           7590351-7590623,7590853-7591062,7591425-7591573,
           7591716-7592052
          Length = 996

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 187 RLKLIFNFKMSVCNSGDVKLDAAVNAWLKHDKNPTTRQEVLDDIKNS 327
           RL+  FNF   +     +K+++ VN W+    +  T+   L D KN+
Sbjct: 706 RLRFDFNFHRPLSEEELMKIESLVNQWVSSATHLETKVMDLQDAKNA 752


>01_05_0514 - 22876264-22878567
          Length = 767

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 522 WKTSE*KIRGTHNEGVHIFINTGPFIFNGLSDTTRVVWHN 641
           W T+   I    N  V + +NTG  +    S+T+ V+W +
Sbjct: 51  WSTNITGIAAAANSTVGVILNTGNLVLADASNTSAVLWQS 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,638
Number of Sequences: 37544
Number of extensions: 429560
Number of successful extensions: 1111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)