Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16m05f
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 122 6e-29
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 64 2e-11
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 29 0.77
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.8
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 27 3.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 4.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 4.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.5
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 122 bits (294), Expect = 6e-29
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 8/218 (3%)
Frame = +2
Query: 170 LDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVD---VLQDIGDVVLDSSELTIE 340
LDPS+ S I + +DF+ ++L+G + + V Q + ++LD+S L I+
Sbjct: 5 LDPSTQSNYHDVSISKLDWHARIDFDQELLHGKVSFVIQSARVSQALSHIILDTSYLEIK 64
Query: 341 SIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQ 520
++ ++ +++D GS L I S + I Y+T+ TALQ+L+P Q
Sbjct: 65 NVTINDIPTPFRVDKRRGFLGSALHIVPADEIPSSKSCILTILYSTTKDCTALQFLKPEQ 124
Query: 521 TSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALR-GESR--- 688
T G K PY+FS+CQ IHARS +PCQDTP VK ++ + + V+ S + G +
Sbjct: 125 TIGGKFPYVFSECQAIHARSFIPCQDTPSVKVPCTFKIRS--KLPVIASGIPCGTANFCN 182
Query: 689 -STKTTFNQPMPLPSYLLAIAVGVLEHRTLGPRSKVWS 799
S + F Q P+PSYL I G L +GPRS V++
Sbjct: 183 GSLEYLFEQKNPIPSYLFCILSGDLASTNIGPRSSVYT 220
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 64.1 bits (149), Expect = 2e-11
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 8/192 (4%)
Frame = +2
Query: 215 HVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELD-GAQLTYKLDDPV 391
H LSL D E G + +DVL+D + L L I + L+ G+Q + +
Sbjct: 28 HYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQTVWASE--- 84
Query: 392 PNYGS-KLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPA--QTSGKKHPYLFSQCQ 562
+YG ++ +Q P + + + +T S+ + + + + G +Q +
Sbjct: 85 VSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSYVDSDGNTKYLATTQME 144
Query: 563 PIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL--MSALRGESRSTKTT--FNQPMPLPS 730
P AR PC D P +K T+ ++TA E +T+L M+A+ + T F + + +
Sbjct: 145 PTSARRAFPCWDEPALKATFTIDITAKENYTILSNMNAVEETVKDGLKTARFAETCRMST 204
Query: 731 YLLAIAVGVLEH 766
YLLA V LE+
Sbjct: 205 YLLAWIVAELEY 216
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 29.1 bits (62), Expect = 0.77
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Frame = +2
Query: 215 HVTLSLNVDFENKVLNGSATLDVDVLQ-DIGDVVLDSSELTIESIELDG--AQLTY---- 373
H +++++DF ++ + G + V+ + ++ +VLD + I S+ ++G + +Y
Sbjct: 14 HQKVAIDIDFASQTIIGRTDITVNPIDSNLQKIVLDCYQAEIHSVYVNGDLTKFSYSDAL 73
Query: 374 ---KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWL---------QPA 517
++D+P + L A D I I + + P L+ L QP
Sbjct: 74 KKLRIDEPNSTVNQHHQLNLQYEALMNDLGGINI-FLSKPPGDELRPLIVSIDFSVHQPI 132
Query: 518 --------QTSGKKHPYLFSQCQ--PIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLM 664
++P++F+ P S LPC D + + T++ E+T P+ + LM
Sbjct: 133 FGITFVGIDPVDHRYPHVFTNNSIIPYSTCSWLPCVDGIWERSTWEFEITLPKTLSSLM 191
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 128 SRFSQVPVMGAFSPLDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVD 286
+R + P + P PSS S P + I H T S++ D + + + +D+D
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLD 159
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 399 MAPN*LYNCRNEPQVAIS*KLKLSTQRPRPRLRYNGYSQLK 521
++ N Y RN ++++ + ++ P+ RLR+NG+S L+
Sbjct: 164 LSGNVSYGTRNRSTMSVNFETPVNAD-PKTRLRFNGHSNLR 203
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +2
Query: 197 EQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 376
E + +K++TLSL V+ E V S + VD L DS+EL I+ + G+ +
Sbjct: 955 EISQLKNLTLSLVVNAEEGVF--STLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDEE 1012
Query: 377 LDD-----PVPNYGSKLT 415
+ D P+ +Y LT
Sbjct: 1013 ISDCYLALPIEDYAKSLT 1030
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 273 VADPFKTLFSKSTFNDKVTCFITACSGREKEDGSRGLKAPMTG 145
++D F KS+ ++V F TA + ++ G GL++ +TG
Sbjct: 439 LSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGGLRSRITG 481
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 209 IKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDP 388
+K + S ++ V NG +D +D + ++ S E + I LD + ++ P
Sbjct: 28 LKVLNKSFRSSRQSSVSNGHGLYSLD--RDETESLMSSHEASNAGISLDSSFRVIQVGQP 85
Query: 389 VPNYGS 406
P YG+
Sbjct: 86 EPQYGN 91
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 251 CFQNPRSTIKSRVLLQLVQAAKRK 180
C+ +P +T K V L+++ KRK
Sbjct: 526 CYNDPNNTFKDDVAKTLIESKKRK 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,138
Number of Sequences: 5004
Number of extensions: 56676
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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