Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m05f
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.087
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.087
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.087
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = +2

Query: 443  GDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIHARSILPCQDTP 604
            G    IK+   +SP A  + WL P + +G    Y L+++      +  H +  LP ++T 
Sbjct: 1215 GSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKNTY 1273

Query: 605  FVKFTYDAEVTAPEEFTVLMSALRGESRSTKTTFNQP 715
            F     D +     +F V  S   GE +S+K     P
Sbjct: 1274 FE--ATDLQQHVEYQFWVTGSTRVGEGQSSKVAAQVP 1308


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.087
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = +2

Query: 443  GDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIHARSILPCQDTP 604
            G    IK+   +SP A  + WL P + +G    Y L+++      +  H +  LP ++T 
Sbjct: 1211 GSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKNTY 1269

Query: 605  FVKFTYDAEVTAPEEFTVLMSALRGESRSTKTTFNQP 715
            F     D +     +F V  S   GE +S+K     P
Sbjct: 1270 FE--ATDLQQHVEYQFWVTGSTRVGEGQSSKVAAQVP 1304


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 116 KQTRSRFSQVPVMGAFSPLDPSSFSRPEQAVIK 214
           K  R+RF  +P++ + +  DP  F  P + V++
Sbjct: 222 KSARTRFDILPLILSANGHDPDYFDIPNELVLE 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,104
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)