Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m02f
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    61   2e-10
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    30   0.43 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   3.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   3.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   3.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   4.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   4.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   9.3  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
 Frame = +2

Query: 386 RLMQLKDTQESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQRLVLFYLANDVVQYSK 565
           +L  L +TQESI  ++ W +  + +  +IV  WL  L      ++L+L YL N+VVQ S+
Sbjct: 11  KLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQQSR 70

Query: 566 -RKGYDFVESWGLYLQKATP---LVRDEKVRPKILRIFKIWEQRSVYDDEFLSDL 718
            +K  +++++   Y+  +           ++ KI  +F +W QR ++  E L  L
Sbjct: 71  VKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDVWCQRGIFSKEILLSL 125


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 350 ETEDFNTLAFEKRLMQLKDTQES 418
           ETE++N  AFEKRL +LK+ + S
Sbjct: 722 ETEEWNQEAFEKRLKELKNQKRS 744


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 380 EKRLMQLKDTQESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQRLVLFY 535
           E++  QLK+    +Q LSS+C   +   +K+ +   N+ K +  E RLV FY
Sbjct: 48  EEKAKQLKELDFRLQQLSSFCEWNKLAFEKLAA---NMDKHLGTE-RLVTFY 95


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 647 PKILRIFKIWEQRSVYDDEFLSDLTGLL 730
           PKIL++  IWE+ S +  E L  L   L
Sbjct: 120 PKILKLCDIWEKASTFPPEKLESLRSKL 147


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
 Frame = +2

Query: 413  ESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQRLVLFYLANDVV--QY-SKRKGYDF 583
            +S+Q+ SS      T   +  ++   V  ++ IE+  + F   N  V  QY +++K  + 
Sbjct: 809  DSLQTQSSDRQTAITELNEEFATSSEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEE 868

Query: 584  VESWGLYLQKATPLVRDEKVRPKILRIFKIWEQRSVYDDEFLSDLTGLLSAGAIK--KSD 757
            +ES      ++   ++DE    K   + K+ E      D F   ++G+  AG ++  KSD
Sbjct: 869  LESKMSDFDQSVEELQDEMNSIKEDWVSKLEENVQCISDRFSKGMSGMGYAGEVRLGKSD 928

Query: 758  D 760
            D
Sbjct: 929  D 929


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 404 DTQES-IQSLSSWCLKQRTHHKKIVSSWLNVLK 499
           DT+ S + SL+ +CL+Q   H+K+V +  ++ K
Sbjct: 395 DTENSYMSSLAGYCLQQLVSHEKLVKAACHIDK 427


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 397  LHQPLFEG*CIKIFSFTHCFQ 335
            LH P+ EG C K FSF +  Q
Sbjct: 1119 LHDPVLEGICAKRFSFFNAVQ 1139


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 446 KQRTHHKKIVSSWLNVLKRVKIEQRLVLFYLANDVVQYSKRK---GYDFVESWGLYLQK 613
           K+  +    + SW NV++ +++E  ++  ++ ND    + R     YD VE+   ++++
Sbjct: 359 KEFNYKLNALISWSNVMESIQVETLVLQKWVGNDEFDLTMRTPQFNYDGVENTSSFVER 417


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -2

Query: 364 KIFSFTHCFQRKQLQ*LTSYNHSFKTFEYTEH*HYMRRPAIQ*FA---IF-INLKSHSIN 197
           K FSF     R+ +  + S  +S K  E  +  H  ++P+        IF +N K HS+N
Sbjct: 474 KYFSFDKESDRQVIDQVLSDWYSGK-HELVQQSHSYKKPSDSKSVGGNIFSVNSKKHSVN 532

Query: 196 INAK 185
           INAK
Sbjct: 533 INAK 536


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 419  IQSLSSWCLKQR-THHKKIVSSWLNVLKRVKIEQRLVLFYLANDVVQYSKR 568
            ++ + S  LK +   H+   S  ++  +R +IEQ++ +  L ND+V   +R
Sbjct: 1028 VRQVESVALKAKEVQHEDFSSLGVHEYRRKEIEQQVQILKLENDLVAARRR 1078


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 519  LCSIFTLFNTFNQLDTIFL*CVLCFK--HHDDNDCILS*VSFSCINLFSK 376
            LCS+FT  N + +L  I + C+   +   H +N+          I LFS+
Sbjct: 1106 LCSLFTRLNDYERLKKIVVSCLKSLEEARHSENNFQKMVRLIDLIGLFSR 1155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,574
Number of Sequences: 5004
Number of extensions: 59286
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)