Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16m02f
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 66 3e-11
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138... 66 3e-11
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 64 9e-11
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 32 0.45
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 4.2
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 29 5.5
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 5.5
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 29 5.5
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 28 9.6
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 66.1 bits (154), Expect = 3e-11
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 9/125 (7%)
Frame = +2
Query: 347 GETEDFNTLAFEKRLMQLKDTQESIQS------LSSWCLKQRTHHKKIVSSWLNVLKRVK 508
G + F+ AF ++L +L +T IQS LS+WC+ R +K+V +W
Sbjct: 18 GGSGSFSEQAFVEKLNKLNNTATRIQSILSSAALSNWCIFHRKRARKVVDTWEKQYNSAN 77
Query: 509 IEQRLVLFYLANDVVQYSKRKGYDFV-ESWGLY--LQKATPLVRDEKVRPKILRIFKIWE 679
++++ YL+ND++Q SKRKG +FV E W + L K + E + + R+ IW+
Sbjct: 78 KDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFYVNGGEDGKKVVGRLIDIWD 137
Query: 680 QRSVY 694
+R V+
Sbjct: 138 ERKVF 142
>11_01_0172 -
1383568-1384440,1385336-1385401,1385470-1385505,
1385604-1385743,1386978-1387134,1387245-1387418,
1387540-1387790,1390296-1390446
Length = 615
Score = 66.1 bits (154), Expect = 3e-11
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 9/125 (7%)
Frame = +2
Query: 347 GETEDFNTLAFEKRLMQLKDTQESIQS------LSSWCLKQRTHHKKIVSSWLNVLKRVK 508
G + F+ AF ++L +L +T IQS LS+WC+ R +K+V +W
Sbjct: 20 GGSGSFSEQAFVEKLNKLNNTATRIQSILSSAALSNWCIFHRKRARKVVDTWEKQYNSAN 79
Query: 509 IEQRLVLFYLANDVVQYSKRKGYDFV-ESWGLY--LQKATPLVRDEKVRPKILRIFKIWE 679
++++ YL+ND++Q SKRKG +FV E W + L K + E + + R+ IW+
Sbjct: 80 KDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFYVNGGEDGKKVVGRLIDIWD 139
Query: 680 QRSVY 694
+R V+
Sbjct: 140 ERKVF 144
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 64.5 bits (150), Expect = 9e-11
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Frame = +2
Query: 422 QSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQRLVLFYLANDVVQYSKRKGYDFVESWGL 601
++LS WC+ R + ++IV +W EQ+ YLAND++Q SKR G +FVE +
Sbjct: 48 RALSHWCIYHRKNAEQIVQTWAKQFHSSGNEQKTPFLYLANDILQNSKRNGTEFVEEFWK 107
Query: 602 YLQKATPLVR---DEKVRPKILRIFKIWEQRSVY 694
L A V DE+ + + R+ +IW++R V+
Sbjct: 108 VLPGALKDVTENGDERGKKVVSRLVEIWQERRVF 141
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 485 LNVLKRVKIEQRLVLFYLANDVVQYSKRKGYDFV-ESW 595
LN ++ E+R+ L YLAND+VQ SK+ +V E W
Sbjct: 751 LNNSRQTPRERRVSLLYLANDIVQNSKKDSGRYVNEFW 788
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 578 DFVESWGLYLQKATPLVRDEKVRPKILRIFKIWEQRSVYDDEFLSDL 718
D +ES+ + T + E ++ ++L++ ++W ++ D +L+ L
Sbjct: 560 DVIESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYLNGL 606
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Frame = +2
Query: 389 LMQLKDTQESIQSLSSWCLKQRTHHKKIVSSWLN-VLKRVKIEQRLVLFYLANDVVQYSK 565
L L T+ESI+ +W +++ + + + V E++L + +L ND++ S
Sbjct: 238 LTNLNGTKESIKGAKTWFMQRSPFAPALAEALKDRVFALEDSERQLHIIFLVNDILFESL 297
Query: 566 RK------------GYDFVESWGLYLQKATPLVRDEKVRPKILRIFKIWEQRSVYDDEFL 709
++ + FV L P +D+ + ++ +I + W + VYD E +
Sbjct: 298 QRRTNSRDLDNEALAFKFVLGSMLARIYNNPQSKDDN-QIRLEKILQFWGSKEVYDQETI 356
Query: 710 SDLTGLLSAG 739
++L + G
Sbjct: 357 ANLERDMKGG 366
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 377 FEKRLMQLKDTQESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQRLVLFYLANDVVQ 556
F+++L L +T S + C+K K + +NV+++++ VL +
Sbjct: 1150 FKQQLQALMETLNSTEPHYIRCVKPNNVLKPAIFENVNVMQQLRCGG--VLEAIRISCAG 1207
Query: 557 Y-SKRKGYDFVESWGLYLQKATPLVRDEKVRPK 652
Y ++R Y+F+ +G+ Q+A DEKV K
Sbjct: 1208 YPTRRTFYEFLHRFGILAQEALEGNCDEKVACK 1240
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -1
Query: 242 SVICNIYQFKKPLNKYKRKKMRLETALTAQG 150
SV NIY +K+P + ++R++ +L T++T G
Sbjct: 867 SVAENIYDYKEPSHWHERQQQKLVTSITKIG 897
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 374 AFEKRLMQLKDTQESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQRLVLFYLANDVV 553
+F+++L L +T S++ C+K K + NVL++++ VL + +
Sbjct: 620 SFKQQLQALLETLSSVEPHYIRCIKPNNVLKPAIFENSNVLQQLRCGG--VLEAIRISCL 677
Query: 554 QYSKRKGYD-FVESWGLYLQKATPLVRDEKVRPKIL 658
Y R+ +D FV+ +G+ L + DE ++L
Sbjct: 678 GYPTRRTFDEFVDRFGVLLPEVLDESYDEVTATEML 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,977,685
Number of Sequences: 37544
Number of extensions: 307940
Number of successful extensions: 615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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