Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m02f
         (782 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        29   0.12 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   1.5  

>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
 Frame = +2

Query: 401 KDTQESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVKIEQ-----RLVLFYLANDVVQYSK 565
           K+T+   Q    +    R   KK+ S+W N ++ ++ ++     R     +  D   Y +
Sbjct: 96  KETEVLCQQEREFREYLRNGSKKMTSTWENTVQNIRDKKEAERLRRDKAKVEEDQRHYRE 155

Query: 566 RKGYDFVESWGLYLQKATPLVRDEKVRPKIL 658
            K  D ++   L +QKA  L++ +KV P++L
Sbjct: 156 LKAADEIKRREL-IQKAEDLIQKDKVGPRVL 185


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 371  LAFEKRLMQ-LKDTQESIQSLSSWCLKQRTHHKKIVSSWLNVLKRVK 508
            +A EKR+ + L DT+E  + LS   LKQ+   +K + SW+   K  +
Sbjct: 867  VATEKRIKKVLTDTEEVDRKLSE-ALKQQKTLQKELESWIQKEKEAQ 912


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,310
Number of Sequences: 2352
Number of extensions: 12803
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)