Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16m02f
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.45 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.2  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 569 SFYCTEQHRLQDKTKLVSAQSSLFSTHLTNSIRSSY 462
           ++ C  +HRL  +T+L + +  L  T    S+R  +
Sbjct: 178 TYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKF 213


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 98  INVTEKNCVYVNVNVKSNPELLARFLTAFFCVYIY*VAF*IDKYCKLLNCRSSHIVLMFS 277
           ++V E    YV  + K+NP   A   TA   V  +      + Y  +L+C ++HI   F+
Sbjct: 315 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQI-SNGYTPVLDCHTAHIACKFA 373

Query: 278 VFK 286
             K
Sbjct: 374 DIK 376


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 344 MGETEDFNTLAFEKRLMQLKDTQESI---QSLSSWCLKQRTHHKKIVSSWLNVLKRVKIE 514
           M  T DF +L+FE           ++     L  W    +TH KK+      +L R+  E
Sbjct: 6   MAATFDFPSLSFEDSDEGSNWNWNTLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIP-E 64

Query: 515 QRLV 526
           Q +V
Sbjct: 65  QGVV 68


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 35  ILENKVFFS*VFCSTKLKPFMINVTEKNCVYVNVNVKSN 151
           +L+++ F S +  S KLK   I  TEK     N + + N
Sbjct: 656 MLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVN 694


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 662 IFKIWEQRSVYDDEFLSDLTGLLS 733
           ++ +WEQ  + DD+    L G+L+
Sbjct: 73  MYCLWEQFGLVDDKRELSLNGMLT 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 367 YISLRKEVDAAKRHSGEYT 423
           Y SL    + A  HSG+YT
Sbjct: 670 YSSLLSITNLAAEHSGDYT 688


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 79  STAKYLTKKNLIFKN 35
           ST K LTK+N  F+N
Sbjct: 455 STEKRLTKQNTAFEN 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,565
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)