Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l24f
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   6.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 13  MKFFLALGFLVVCCSALSTKQQRRFPDDFLIGTATASYQIEGAWNEDGKGENIWDY 180
           M  F ALG  VV    L  + Q  +  D      +  Y       E  KG++IWDY
Sbjct: 271 MFVFAALGEFVVV-KVLDLRSQLEY--DLQTSIMSRHYSTRAIVIE--KGQSIWDY 321


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 196 PAAVKDGSTGDIAANSYHNVERDVEMM 276
           P  V DG   ++      N+E D E+M
Sbjct: 22  PKVVYDGPIYELRQIEEENIEPDTELM 48


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 58  ALSTKQQRRFPDDF 99
           A++TK++ +FP +F
Sbjct: 138 AVTTKEKAKFPQEF 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,003
Number of Sequences: 438
Number of extensions: 1811
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)