Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l19f
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    50   3e-07
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.89 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    28   1.2  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   3.6  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   4.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.3  

>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
 Frame = +2

Query: 356 KTAEEMTPEQKL-AEKLRQQKLQEESDLRLAMETFGVTEGNIG------KLDNFHPTTKE 514
           K +E    E+ L + K   ++ + +SDL  AM+ F + + N        + D     TK 
Sbjct: 92  KASEAAAKEESLESSKEAMRQAEIDSDLANAMDLFDIVDKNSASANRSKQADQRQLKTKA 151

Query: 515 EYTEFADLLTKKITFYKAKDEFPGFIDDLVKNILVQMSSADIRRIKLTVDNLYIEKQKAE 694
           +Y  F   + KK+   +   E+  F+ DL+  +L  +++ +++ ++ +V+ L + K++ E
Sbjct: 152 DYAAFQADILKKVKNCQTTAEYNNFVQDLIPLLLTGLNATNLKAVQKSVNKLVVNKEQQE 211

Query: 695 KNDKTKKA 718
           K    + A
Sbjct: 212 KTQSKRGA 219


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 365 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNI 478
           EE++  Q+  +KLR     E  D +L +  FG TE N+
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNL 100


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 413 KLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFAD 535
           +L E  D  L  ETFGV+ G+IG+  +F  TT +   +  D
Sbjct: 39  QLNEAGD-ELNDETFGVSAGSIGRDFDFSGTTAQASAQLED 78


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 606 LTRSSMNPGNSSLAL*KVIFFVRRSANSVYSSFV 505
           L R+ + P N  L + +++ F+R +A  V +SFV
Sbjct: 214 LNRNELFPSNGPLEVLEILSFLRCNAKCVQNSFV 247


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 368 EMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADL 538
           E   E+K   +      ++E D  +A E   +T     K  + +P +K+E    AD+
Sbjct: 145 EKESEEKETNEASPASEEDEDDFNVAWEVLDLTRVMQSKAVDAYPDSKDEKIRLADI 201


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 383  QKLAEKLRQQ-KLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADLLTKKITF 559
            +KL +   Q  K+  E+   L       +   +G+L+  H +   +  EFAD L+K I++
Sbjct: 1182 EKLCDSSSQNDKISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISY 1241

Query: 560  Y 562
            +
Sbjct: 1242 H 1242


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 350 TEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNF 496
           T +T     P   LA+  +QQ    ++DLR+ ++   +T G +  +D F
Sbjct: 224 TSETVYAHEPSDSLAKASKQQIPTVQNDLRILIK-LDITIGRLNLIDQF 271


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 590 IDDLVKNILVQMSSAD-IRRIKLTVDNL 670
           IDD +   L+Q S AD IR I   VD L
Sbjct: 725 IDDFINRELIQFSMADNIRSIPSVVDGL 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,433
Number of Sequences: 5004
Number of extensions: 44729
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)