Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l16r
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    29   0.053
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    29   0.053
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 442 YCCVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLPDLCYSWW 293
           Y C G + +    +  H  EL W   ++ L   G+  RPE+LP      W
Sbjct: 785 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMIVGI--RPERLPSFDDECW 832


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 442 YCCVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLPDLCYSWW 293
           Y C G + +    +  H  EL W   ++ L   G+  RPE+LP      W
Sbjct: 823 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMIVGI--RPERLPSFDDECW 870


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -3

Query: 561 SYNDWMPSTSTRLWSLCSVA*TLMVDSVPNL---DRKAMLV*FTAVWVHCRYASAWMPY 394
           SY  W+P     + S+ SV   L + SV  +       + V FT     C Y   W PY
Sbjct: 112 SYEIWVPDIV--MHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPY 168


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 343 GLNGRPEKLPDLC 305
           GLN  P++ PD C
Sbjct: 324 GLNNTPDRTPDQC 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,107
Number of Sequences: 438
Number of extensions: 5869
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)