Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16l16f
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1226 + 25394106-25394168,25394243-25394396,25394548-253946... 149 3e-36
01_01_0336 + 2712412-2712576,2713663-2713738,2713840-2713898,271... 70 2e-12
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 51 8e-07
11_01_0569 + 4515722-4515733,4517579-4517701,4517812-4517934,452... 31 0.65
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 31 0.65
11_07_0018 - 27458523-27458541,27458722-27458864 29 3.5
09_02_0263 + 6416010-6416152,6416333-6416351 29 3.5
04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594 28 8.0
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 28 8.0
>08_02_1226 +
25394106-25394168,25394243-25394396,25394548-25394664,
25395541-25395607,25395701-25395828,25396327-25396460,
25396552-25396650,25396780-25396902
Length = 294
Score = 149 bits (360), Expect = 3e-36
Identities = 64/127 (50%), Positives = 88/127 (69%)
Frame = +2
Query: 308 IKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDA 487
++VL ++DRLDA+D++ + YI LQ EDGSF GD WGE+DTRFS+ A+ LSLL RL+
Sbjct: 92 VQVLCLFDRLDALDVDKVADYIAGLQNEDGSFSGDIWGEVDTRFSYIAICTLSLLHRLEK 151
Query: 488 IDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCE 667
I++ K V++++SC N DGGFG+ PG ++CCVG L+I + + D L WWLCE
Sbjct: 152 INVQKAVDYIVSCKNLDGGFGAMPG-------VFCCVGALAITGSLHHIDRDLLGWWLCE 204
Query: 668 RQLPSGG 688
RQ GG
Sbjct: 205 RQCKEGG 211
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +2
Query: 308 IKVLAMYDRLDAVDIEGIVRYIVSLQQ-EDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLD 484
+ L + +L AV+ + ++ +I+S E G F G+ + ++ AV L L RLD
Sbjct: 43 LTTLDLLHKLRAVEADEVIEWIMSCYHPESGGFGGNVGHDAHVLYTLSAVQVLCLFDRLD 102
Query: 485 AIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLC 664
A+D++K +++ N DG F E Y + TLS+ R++ ++ + ++
Sbjct: 103 ALDVDKVADYIAGLQNEDGSFSGDIWGEVDTRFSYIAICTLSLLHRLEKINVQKAVDYIV 162
Query: 665 ERQLPSGG 688
+ GG
Sbjct: 163 SCKNLDGG 170
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 171 LLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELM 299
L +KH Y+ + KD +E + E++R++G YW LT ++L+
Sbjct: 7 LAAEKHVRYIVTVEKRKDSFESLVMEHIRLNGAYWGLTTLDLL 49
>01_01_0336 +
2712412-2712576,2713663-2713738,2713840-2713898,
2714009-2714148,2714690-2714745,2714832-2714908,
2715007-2715075
Length = 213
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +2
Query: 305 IIKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWG-EIDTRFSFCAVMCLSLLQRL 481
I+K++ YD L +D + ++ + +LQQ DGSF G E D RF +CA S+L+
Sbjct: 118 ILKIVG-YD-LANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAAAICSMLKDW 175
Query: 482 DAIDINKTVEFVLSCMNFDGGFGSKPGSESH 574
+D K +++LSC ++DGGFG PGSESH
Sbjct: 176 TGMDKEKAKQYILSCQSYDGGFGLVPGSESH 206
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 419 GEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCV 598
GEID R S+ A+ SL+ LD ++ C ++GG +P +E+H G +C +
Sbjct: 226 GEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGL 285
Query: 599 GTLSICKRMDAL 634
T+ + +D L
Sbjct: 286 ATMILLNEVDKL 297
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 452 VMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTL 607
+ L+LL + + V+F+ C + DGG+G PG H Y V TL
Sbjct: 103 IHALALLDEIPDDVEDDIVDFLSRCQDKDGGYGGGPGQLPHLATTYAAVNTL 154
>11_01_0569 +
4515722-4515733,4517579-4517701,4517812-4517934,
4520422-4520520,4520649-4520705,4521421-4521533,
4521633-4521810,4523684-4523764,4523837-4523920,
4525429-4525437
Length = 292
Score = 31.5 bits (68), Expect = 0.65
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 368 YIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRL--DAIDINKTVEFVLSCMNFDG 541
+I S Q+ DGS+YG WG T ++ AV L R ++ + K +F+LS G
Sbjct: 165 FIESSQRSDGSWYG-SWGICFTYATWFAVTGLVSAGRTLGNSATVRKACDFLLSKQLPSG 223
Query: 542 GFG 550
G+G
Sbjct: 224 GWG 226
>03_05_1094 - 30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -2
Query: 683 HWAAVVHIATTPARLRVGHPCACISTVYPHSSKLDQHGFPIQVWN 549
H + H+ T P + VG PC V +Q+G + +W+
Sbjct: 1000 HTCCIAHLGTYPPNVCVGTPCWMAPEVLRAMRDKNQYGLEVDIWS 1044
>11_07_0018 - 27458523-27458541,27458722-27458864
Length = 53
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 341 AVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFS 442
A+ + +V Y+ + Q+ G DKW E+D R S
Sbjct: 3 AMSADNLVIYVATTQRGGGQQEWDKWNELDMRTS 36
>09_02_0263 + 6416010-6416152,6416333-6416351
Length = 53
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 341 AVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFS 442
A+ + +V Y+ + Q+ G DKW E+D R S
Sbjct: 3 AMSADNLVIYVATTQRGGGQQEWDKWNELDMRTS 36
>04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594
Length = 360
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 456 CVYHSYNDWMPSTSTRLWSLC 518
C Y+ Y W+P T WS C
Sbjct: 267 CAYNQYAHWIPLVITPKWSRC 287
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 556 TWIGKPCWSNLLLCGYTVDMQAHG 627
T++G PCW+++ G T AHG
Sbjct: 190 TFVGTPCWADIWSFGITALELAHG 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,513,251
Number of Sequences: 37544
Number of extensions: 378439
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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