Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16l16f
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical p... 140 1e-33
U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical p... 140 1e-33
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 76 3e-14
Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical pr... 75 6e-14
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 30 1.8
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 28 5.5
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 28 5.5
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 28 5.5
>U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical
protein B0280.1b protein.
Length = 325
Score = 140 bits (338), Expect = 1e-33
Identities = 61/127 (48%), Positives = 85/127 (66%)
Frame = +2
Query: 308 IKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDA 487
++ L +++ ++ D + I Y+ LQQEDGSF GD GE+DTRF+ C++ LL RL
Sbjct: 108 VQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLST 167
Query: 488 IDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCE 667
++I+ V F++ C N DGGFG++PGSESH+G IYCCVG L+I R+D + D A WL
Sbjct: 168 LNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAF 227
Query: 668 RQLPSGG 688
RQ SGG
Sbjct: 228 RQCDSGG 234
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +3
Query: 120 MSFTTKDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELM 299
+ F KDV L ++ P LL H++++ Y NK+ Y Y M E+LR+SGIYW + AM+L
Sbjct: 7 LDFARKDVDLPQNSPNELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLS 66
Query: 300 GQSSR 314
Q R
Sbjct: 67 KQLER 71
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +2
Query: 443 FCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKR 622
+ V + L ++L+ + + V +VL C N DGG+G PG +SH C V TL I
Sbjct: 57 YWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNS 116
Query: 623 MDALHADELAWWLCERQLPSG 685
++ AD ++ ++ Q G
Sbjct: 117 IEKADADTISEYVKGLQQEDG 137
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/106 (24%), Positives = 50/106 (47%)
Frame = +2
Query: 332 RLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVE 511
RL ++I+ VR+++ DG F E + +C V L++ RLD ID ++T E
Sbjct: 164 RLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAE 223
Query: 512 FVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADEL 649
++ GG +P + + +L+I R++ + +D +
Sbjct: 224 WLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAM 269
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/127 (20%), Positives = 48/127 (37%)
Frame = +2
Query: 308 IKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDA 487
+ + + +L+ + E IV Y++ + DG + + + CAV L + ++
Sbjct: 60 VNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEK 119
Query: 488 IDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCE 667
D + E+V DG F E C + T + R+ L+ D +L
Sbjct: 120 ADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMR 179
Query: 668 RQLPSGG 688
GG
Sbjct: 180 CYNTDGG 186
>U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical
protein B0280.1a protein.
Length = 335
Score = 140 bits (338), Expect = 1e-33
Identities = 61/127 (48%), Positives = 85/127 (66%)
Frame = +2
Query: 308 IKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDA 487
++ L +++ ++ D + I Y+ LQQEDGSF GD GE+DTRF+ C++ LL RL
Sbjct: 108 VQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLST 167
Query: 488 IDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCE 667
++I+ V F++ C N DGGFG++PGSESH+G IYCCVG L+I R+D + D A WL
Sbjct: 168 LNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAF 227
Query: 668 RQLPSGG 688
RQ SGG
Sbjct: 228 RQCDSGG 234
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +3
Query: 120 MSFTTKDVVLKEDRPKTLLLQKHSDYLASYGLNKDDYEYCMTEYLRMSGIYWSLTAMELM 299
+ F KDV L ++ P LL H++++ Y NK+ Y Y M E+LR+SGIYW + AM+L
Sbjct: 7 LDFARKDVDLPQNSPNELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLS 66
Query: 300 GQSSR 314
Q R
Sbjct: 67 KQLER 71
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +2
Query: 443 FCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKR 622
+ V + L ++L+ + + V +VL C N DGG+G PG +SH C V TL I
Sbjct: 57 YWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNS 116
Query: 623 MDALHADELAWWLCERQLPSG 685
++ AD ++ ++ Q G
Sbjct: 117 IEKADADTISEYVKGLQQEDG 137
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/106 (24%), Positives = 50/106 (47%)
Frame = +2
Query: 332 RLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVE 511
RL ++I+ VR+++ DG F E + +C V L++ RLD ID ++T E
Sbjct: 164 RLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAE 223
Query: 512 FVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADEL 649
++ GG +P + + +L+I R++ + +D +
Sbjct: 224 WLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAM 269
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/127 (20%), Positives = 48/127 (37%)
Frame = +2
Query: 308 IKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDA 487
+ + + +L+ + E IV Y++ + DG + + + CAV L + ++
Sbjct: 60 VNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEK 119
Query: 488 IDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCE 667
D + E+V DG F E C + T + R+ L+ D +L
Sbjct: 120 ADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMR 179
Query: 668 RQLPSGG 688
GG
Sbjct: 180 CYNTDGG 186
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 75.8 bits (178), Expect = 3e-14
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Frame = +2
Query: 275 EFNCYGTHGTIIKVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGDKWG-EIDTRFSFCA 451
E N T+ ++ + + D L VD + I++ + + Q+++G F+ G E D RF FCA
Sbjct: 113 EANLAQTYSALLSLAILGDDLKKVDRKAILKTVKTAQRDNGCFWSQGVGSESDMRFVFCA 172
Query: 452 VMCLSLLQ--RLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRM 625
V +L + ID K F+ +N DGG G PG ESH G +C + +L++ R+
Sbjct: 173 VAISHILDGDKEQTIDWTKLAGFLRQSLNIDGGIGQAPGDESHGGSTFCAIASLALSNRL 232
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +2
Query: 347 DIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSC 526
DI+ ++R+ ++Q++D F+G D+ ++F L +L + EF++ C
Sbjct: 242 DIDRLIRW--AIQKQDIGFHGRAHKPDDSCYAFWIGATLKILNAYHLVSKQHLREFLMIC 299
Query: 527 MN-FDGGFGS--KPGSESHAGLIYCCVGTLSI 613
+ GGF +PG S Y + LS+
Sbjct: 300 QHPHIGGFCKYPEPGGYSDILHTYFSIAALSL 331
>Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.6 protein.
Length = 401
Score = 74.5 bits (175), Expect = 6e-14
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = +2
Query: 329 DRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQR-LDAIDINKT 505
+ L +++ + ++ + E G FY + GEID R ++CA+ ++ +D I N
Sbjct: 155 EALRSINRVTLFNFLKKCKHESGGFYMHEGGEIDMRSAYCALATCEIVGLPMDEIS-NGV 213
Query: 506 VEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCERQL 676
E+++SC +F+GGFG +P +E+H G +C V +L + R + L W RQ+
Sbjct: 214 AEWIISCQSFEGGFGGEPYTEAHGGYTFCAVASLVLLNRFRLADMEGLLRWATRRQM 270
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +2
Query: 416 WGEIDTRFSFCAVMCLSLLQRLDAIDINKTVE----FVLSCMNFDGGFGSKPGSESHAGL 583
+ +D S+ ++ L+ LDA N +E F+ SC + +GG+G PG +H
Sbjct: 81 YATLDASRSWMCYWGVNALKILDAEIPNDVIENIIVFLKSCEHPEGGYGGGPGQLAHLAP 140
Query: 584 IYCCVGTLSICKRMDALHA 640
Y V L ++ +AL +
Sbjct: 141 TYAAVMCLVSLQKEEALRS 159
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = +2
Query: 278 FNCYGTHGTIIKVLAMYDRLDAVDIE---GIVRYIVSLQQEDGSFYGDKWGEIDTRFSFC 448
F YG + K L +Y LD E G L + DG +G G D +
Sbjct: 82 FGVYGRDKSK-KTLLIYGHLDVQPAEKEDGWNTNPFELTEIDGKLFGR--GSTDDKGPVI 138
Query: 449 A-VMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESH 574
A + L +LQ L ID+ ++FVL CM G G E +
Sbjct: 139 AWIAVLKVLQTL-GIDLPINIKFVLECMEESSSEGLDKGLEDN 180
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 540 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 430
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
protein C47D12.1b protein.
Length = 4061
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 540 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 430
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
protein C47D12.1a protein.
Length = 4064
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 540 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 430
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 540 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 430
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,990,433
Number of Sequences: 27780
Number of extensions: 334870
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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