Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l12r
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      125   5e-31
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.69 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.69 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  125 bits (302), Expect = 5e-31
 Identities = 57/124 (45%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = -1

Query: 871 IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARG 692
           ++FVE K+KA+ I+  +    +P   +HGD+ Q++R+E L  FK GR SILVAT VAARG
Sbjct: 455 LVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARG 514

Query: 691 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAK-DLVSVLQEA 515
           LD+  + +VIN+D P   ++Y+HRIGRTGR  ++G + +FF P      + DLV +L++A
Sbjct: 515 LDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQA 574

Query: 514 NQII 503
           NQ +
Sbjct: 575 NQSV 578


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 595 ILNVQFSQYDGCNPPTNLDNQNLLHI 672
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 595 ILNVQFSQYDGCNPPTNLDNQNLLHI 672
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 859 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 758
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,496
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)