Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16l12f
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 205 4e-54
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 122 5e-29
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 107 2e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 83 5e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 80 3e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 4e-16
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 5e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 76 6e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 1e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 70 3e-13
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 65 1e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 65 1e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 2e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 6e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 1e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 59 8e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 1e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 57 2e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 7e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 1e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 42 1e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.005
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.23
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.53
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.1
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.7
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 6.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 6.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 6.5
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 26 6.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.6
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 8.6
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 8.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 205 bits (501), Expect = 4e-54
Identities = 94/164 (57%), Positives = 118/164 (71%)
Frame = +2
Query: 251 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 430
N+ + DW + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 431 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 610
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 611 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
P + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+G
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYG 231
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 122 bits (294), Expect = 5e-29
Identities = 57/160 (35%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Frame = +2
Query: 266 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 442
D ++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 443 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 622
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 623 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
G+GPIA+++ PTRELA QI + F +R C +G
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYG 527
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 107 bits (256), Expect = 2e-24
Identities = 52/130 (40%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Frame = +2
Query: 362 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 541
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 542 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 712
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 713 SYVRNTCVFG 742
R V G
Sbjct: 352 LGFRCVSVVG 361
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 82.6 bits (195), Expect = 5e-17
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = +2
Query: 407 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 586
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 587 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 679
A+ ++N + P LV++PTRELA Q
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 80.2 bits (189), Expect = 3e-16
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Frame = +2
Query: 377 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 556
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 557 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 697
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 698 DFGHTSYVRNTCVFG 742
F + S+VR V+G
Sbjct: 277 KFCYRSWVRPCAVYG 291
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 79.8 bits (188), Expect = 4e-16
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 599 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
+ NN P A+VLAPTRELA QI + G + VR+ + G
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVG 150
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.2 bits (179), Expect = 5e-15
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 389 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 568
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 569 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 691
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/108 (34%), Positives = 62/108 (57%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
+ + AL+L+P RELA Q +V DF + +R+ + G
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVG 175
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/94 (41%), Positives = 55/94 (58%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 700
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/92 (39%), Positives = 56/92 (60%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVA 694
+ +P ++ L+L PTRELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 70.1 bits (164), Expect = 3e-13
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Frame = +2
Query: 347 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 526
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 527 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 700
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Frame = +2
Query: 410 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 583
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 584 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 724
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 64.9 bits (151), Expect = 1e-11
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Frame = +2
Query: 353 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 532
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 533 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-H 709
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 710 TSYVRNTCVFG 742
+ + C+ G
Sbjct: 116 MNVQCHACIGG 126
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/96 (33%), Positives = 56/96 (58%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 706
++ + + L+L PTRELA Q QV G
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.5 bits (145), Expect = 6e-11
Identities = 39/118 (33%), Positives = 60/118 (50%)
Frame = +2
Query: 353 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 532
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 533 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 706
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 61.7 bits (143), Expect = 1e-10
Identities = 37/108 (34%), Positives = 54/108 (50%)
Frame = +2
Query: 419 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 598
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 599 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
+ P G AL+L PTRELA QI + A G +++ + G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVG 111
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 58.8 bits (136), Expect = 8e-10
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Frame = +2
Query: 272 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 445
D++ L N F + P P++ ++ +++ + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEG 55
Query: 446 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 622
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 623 RGDGPIALVLAPTRELAQQIQQVA 694
G A+++APTREL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 58.0 bits (134), Expect = 1e-09
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +2
Query: 470 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 643
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 644 LVLAPTRELAQQIQQ 688
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 57.2 bits (132), Expect = 2e-09
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Frame = +2
Query: 410 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 589
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 590 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFG 742
+ I+ +++ AL+LAPTRELAQQIQ+V G V + C+ G
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 55.6 bits (128), Expect = 7e-09
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +2
Query: 467 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 634
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 635 PIALVLAPTRELAQQIQQVA 694
A+++APTREL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.6 bits (118), Expect = 1e-07
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 386 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 562
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 563 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 742
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 452 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 631
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 632 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 742
G ++ LVL TRELA QI+ A F + VR +G
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYG 156
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 530 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 682
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 530 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 682
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 682
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 518 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 676
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 29.5 bits (63), Expect = 0.53
Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Frame = -2
Query: 517 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFDFIW* 338
+Y L +G H L ++ + F K ++ + + SY++I+ + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 337 SFENCRMWIIKVFVERLERNRIPIWAT----HVLTSREFFFPTKSSRSSKSIATVAKSRR 170
+ F L+ NR+ I A+ H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 169 IIAEFVASSKFGTTVSTAII 110
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 467 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 607
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +2
Query: 377 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 556
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 557 SGKTLAYILPAIVHINNQPPIRRGD 631
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -2
Query: 259 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 113
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 112 IPVT 101
PV+
Sbjct: 198 APVS 201
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +1
Query: 553 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 705
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 274 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 131
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 206 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 48
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Frame = +1
Query: 526 KEFSWRSPNGFRQNVGLHL------ASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSA 687
KE W F +G+ L A AHKQ ER + L ++Q + S
Sbjct: 155 KENWWPLKETFENKLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214
Query: 688 SCCR 699
SCC+
Sbjct: 215 SCCK 218
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 115 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 35
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 8.6
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = -2
Query: 313 IIKVFVERLERNRIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFG 134
++ F E P + V S F ++ S +S AT+AK + +S KF
Sbjct: 129 LLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFL 187
Query: 133 TTVSTAIIPV--TRHDYFSDLVEDVYLNYGFFLTQG 32
+ V T H+Y+++LV+ ++ F +QG
Sbjct: 188 FEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQG 223
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 272 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 415
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 470 PLSLHLVAHNQENL--LLQSIE 411
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,700
Number of Sequences: 5004
Number of extensions: 64702
Number of successful extensions: 229
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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