Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l10r
         (954 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   5.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   9.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   9.4  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -2

Query: 782 SSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQR 609
           SS  AN  Y P++RN     P  H Q              +Q+Q Q  G+   P + R
Sbjct: 2   SSYFAN-SYIPDLRNGGVEHPHQHQQHYGAAVQVPQQTQSVQQQSQQAGDPCDPSLLR 58


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 772 QPIINIHQTCATHQLH 725
           Q  + IH TC  H LH
Sbjct: 320 QKHLKIHDTCGVHNLH 335


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 716 LLVVELVGCACLVYIYN 766
           LL++ LVG  C+++I++
Sbjct: 67  LLIMSLVGNCCVIWIFS 83


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 716 LLVVELVGCACLVYIYN 766
           LL++ LVG  C+++I++
Sbjct: 67  LLIMSLVGNCCVIWIFS 83


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 561 NFQKHTSYFPSQIRV 605
           N Q+HT YF  Q+ V
Sbjct: 239 NLQRHTGYFLIQVYV 253


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 473 DEPAVQQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLF 586
           DEP + + L+L   +   H LT ++   Y+  K ++ F
Sbjct: 244 DEPPLGKNLNLSLHASLNHTLTKDQPETYELVKEWRDF 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,723
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)