Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l10f
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    27   4.1  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   4.1  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  

>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 301 SIWYYINTLITLLHFTSILFH 363
           S  YY NTLI LL F + LF+
Sbjct: 138 SFGYYFNTLIILLRFIAGLFY 158


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 286 ILMHPSIWYYINTLITLLHFTSI 354
           +L  P++W  + T+ITL  F  I
Sbjct: 192 VLQTPALWEIVETMITLFQFAQI 214


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 83  MTENTRFFIWSSTS*ASSN 27
           M+ NT +F W+STS  SS+
Sbjct: 347 MSSNTTYFYWNSTSSLSSS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,215
Number of Sequences: 5004
Number of extensions: 63995
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)