Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l10f
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0594 + 25349612-25352530                                         28   7.6  
05_03_0088 - 8308587-8308649,8308682-8308738,8310403-8310501,831...    28   7.6  

>11_06_0594 + 25349612-25352530
          Length = 972

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 557 SIPEV*SSYCATIIYHFEKDKEEHSKFMVN 468
           S+PEV  S+C   IY     +EEH++ +V+
Sbjct: 334 SLPEVAQSFCPYRIYDLRYIQEEHNRSLVD 363


>05_03_0088 -
           8308587-8308649,8308682-8308738,8310403-8310501,
           8311501-8311620,8311715-8311837,8312416-8312471,
           8315404-8315451,8315555-8315615
          Length = 208

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 390 YECGYTYHWLNYCHNFKLIRRSKPNYVHH 476
           YEC  T HWL      K+I +  P+Y++H
Sbjct: 178 YECERTTHWLEV---IKVINQVHPSYLNH 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,382,286
Number of Sequences: 37544
Number of extensions: 333609
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)