Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16l03r
         (885 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590095-1|CAH73318.1|  894|Homo sapiens Scm-like with four mbt ...    32   3.2  
AL158046-3|CAI19142.1|  894|Homo sapiens Scm-like with four mbt ...    32   3.2  
AL139125-3|CAI18944.1|  894|Homo sapiens Scm-like with four mbt ...    32   3.2  
AL138771-1|CAI21746.1|  894|Homo sapiens Scm-like with four mbt ...    32   3.2  
AB046837-1|BAB13443.1|  904|Homo sapiens KIAA1617 protein protein.     32   3.2  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>AL590095-1|CAH73318.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 330 TNTVQGKYCN*Q--INHNCFKNKYL 398
           T TV GKYC  Q  INH CF   YL
Sbjct: 519 TGTVNGKYCCPQLFINHRCFSGPYL 543


>AL158046-3|CAI19142.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 330 TNTVQGKYCN*Q--INHNCFKNKYL 398
           T TV GKYC  Q  INH CF   YL
Sbjct: 519 TGTVNGKYCCPQLFINHRCFSGPYL 543


>AL139125-3|CAI18944.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 330 TNTVQGKYCN*Q--INHNCFKNKYL 398
           T TV GKYC  Q  INH CF   YL
Sbjct: 519 TGTVNGKYCCPQLFINHRCFSGPYL 543


>AL138771-1|CAI21746.1|  894|Homo sapiens Scm-like with four mbt
           domains 2 protein.
          Length = 894

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 330 TNTVQGKYCN*Q--INHNCFKNKYL 398
           T TV GKYC  Q  INH CF   YL
Sbjct: 519 TGTVNGKYCCPQLFINHRCFSGPYL 543


>AB046837-1|BAB13443.1|  904|Homo sapiens KIAA1617 protein protein.
          Length = 904

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 330 TNTVQGKYCN*Q--INHNCFKNKYL 398
           T TV GKYC  Q  INH CF   YL
Sbjct: 529 TGTVNGKYCCPQLFINHRCFSGPYL 553


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 722 FIFSSIIHLIKLYSN*CLYISVYMYYYIF 636
           +IF+ I   I +Y   CLYI +Y+Y YIF
Sbjct: 40  YIFTYIYLYIFIYIYICLYIYLYIYLYIF 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,257,093
Number of Sequences: 237096
Number of extensions: 2150103
Number of successful extensions: 2802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)