Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k24f
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    28   0.51 
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.6  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        24   8.2  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    24   8.2  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 206 RTHRVCQRSWSSLDEWCYSRGPELG 280
           R   + + SW  +DEWC   G E+G
Sbjct: 628 RHDSIHELSWIDVDEWCIRGGSEIG 652


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 75  DDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQSSAD 188
           D     LV PN+   + +H PVV T Y      +S A+
Sbjct: 132 DSPNMQLVVPNNFQQMFIHHPVVDTIYSPEESSESQAE 169


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 148 PDTSSQFVCNRRLMPSGTT 204
           P T+  F+ N  L+PSGT+
Sbjct: 494 PKTNDSFILNGLLVPSGTS 512


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +3

Query: 21  TTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQSSADAFRN 200
           TT E I+   E+Y  P YD   P  ++ ++ +++ L + +   R   P  + SS D    
Sbjct: 212 TTKEMINADIEYYKIPVYD--FPYDIEEDEEAIINLSQQL---RATIPFAIVSS-DRLIE 265

Query: 201 YDGLTV 218
            +G TV
Sbjct: 266 MNGQTV 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,264
Number of Sequences: 5004
Number of extensions: 36084
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)