Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k22r
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.003
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 31/101 (30%), Positives = 45/101 (44%)
 Frame = -3

Query: 752 LTQFSNTFPNTQFPGVPPAFQGPNIVPGEWQNGIPQQMIPNGMPGPIGTHNLAPGVMPPG 573
           +TQ S   P++  PG  P+   P+  P   Q G P    P+  P P G     PG  PP 
Sbjct: 9   ITQQSQQ-PSSGAPGPQPS---PHQSPQAPQRGSPPN--PSQGPPPGGP----PGA-PPS 57

Query: 572 SHPQGMMISPETMMMAPEMFGNPTPMIPVPPESFNMQQNMY 450
            +P  MMISP + +   +       + P   +SF  Q ++Y
Sbjct: 58  QNPSQMMISPASGIHQMQQLLQQHILSPTQLQSFMQQHSLY 98


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +2

Query: 272 YHPWTDFPSSPHPFRAND--H*HRDH 343
           YHP    PS  HP R +   H H +H
Sbjct: 316 YHPHQHHPSQYHPHRGSSPHHQHGNH 341


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 680  IVPGEWQNGIPQQMIPNGMPGPIGTHNLAP 591
            I  G W+  I + ++P       G  NL P
Sbjct: 915  ISKGSWETDIDRVLVPGSQQNVAGVFNLRP 944



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 209 KIPSFENTYKLSFGSREGLLLYHPWTDFPSSPH 307
           K PS +N   LS  S+  L L  P   FP   H
Sbjct: 212 KFPSMDNINGLSTESKADLPLLCPAQGFPVPVH 244


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 493 FLYHRKVSICNRICIRWISTW 431
           +L+H  +  C  + + W+S W
Sbjct: 247 YLFHTYIPTCLIVIMSWVSFW 267


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 784 LLVLVHYSLTISHNFQTLFLIRNFLEYHLPSKALTS 677
           LL L+ ++ T++ +FQ  + + N   Y + S+ LTS
Sbjct: 4   LLTLLLFAGTVAADFQHNWQVGNEYTYLVRSRTLTS 39


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -3

Query: 680 IVPGEWQNGIPQQMIPNGMPGPIGTHN-LAPGVMPPGSHPQGMMISPETMMMAPEMFGNP 504
           ++   W  G PQ  +PN +   +G H+ +  G   PG     +M+      +A   +G  
Sbjct: 338 VIIDNWIKGTPQNNVPNWV---MGNHDRVRVGTRYPGRADHMIMLEMILPGVAVTYYGEE 394

Query: 503 TPMI 492
             M+
Sbjct: 395 IGMV 398


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 834 RHISKITYIILIPXDIFQGNYG 899
           RHI+ ++YI  +   +F  ++G
Sbjct: 460 RHINSVSYIDKVARIVFPASFG 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,228
Number of Sequences: 438
Number of extensions: 7170
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)