Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k22f
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    32   0.077
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    29   0.95 
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   6.7  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.7  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   8.8  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 525  IRKWETNIHPRMIKQTMLHPTQDVFGEYDKKQGISTGWLTNQ 650
            +R+W +N+ P M +Q M+   Q V G +  +Q  S  WL ++
Sbjct: 934  MRQWRSNVKPEMTQQQMMDQFQKVIGSF-AQQINSNNWLQSR 974


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 591 DVFGEYDKKQGISTGWLTNQTLIQFKFSNNPLQLKSRLAERLINI 725
           DVF EY  +  ISTG + N    +F   +N  Q+ S   ++LI +
Sbjct: 73  DVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKL 117


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 290 FPTMAILSNRSGYKSLKGESVRNR*H--SRTW 379
           +P M+ L++ SGY  +   SV N  H  + TW
Sbjct: 362 YPAMSRLNSSSGYTCVSSSSVTNSGHTENNTW 393


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = -1

Query: 134 IYRYCVLLI-YRFK-FTHNLPTL-FFMTKLNDYLLFLGCHYLS 15
           I+  CV+ + Y F+ F+H+L  + FF+T +   + F+G HYL+
Sbjct: 41  IFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGFHYLN 83


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 405 MMDYDEASNLWLKTLTIPNTCEVLYRYAICFLNENSNDV 521
           M DY +A  L      +  TC   Y Y IC L+ N+ D+
Sbjct: 23  MQDYLKAKLL----ADVEGTCSGQYGYIICVLDSNTIDI 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,419
Number of Sequences: 5004
Number of extensions: 67685
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)