Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k22f
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619...    37   0.015
03_02_0957 - 12710656-12711017,12711479-12711665                       29   5.3  
06_01_1100 + 9032231-9032419,9033086-9033193                           28   7.0  
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996...    28   7.0  
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    28   9.2  
11_01_0702 - 5782202-5782277,5782692-5782760,5782878-5783026,578...    28   9.2  
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830...    28   9.2  

>08_02_0199 -
           14160881-14161054,14161151-14161306,14161802-14161921,
           14162046-14162143,14162969-14163041,14164472-14164619,
           14165108-14165232,14165611-14165652,14165757-14166074,
           14166633-14167559,14167584-14167852,14167946-14168255,
           14169281-14169465,14170795-14170901,14171320-14171486
          Length = 1072

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 348 VFVTGNTPELGEWDYTKIIMMDYD-EASNLWLKTLTIPNTCEVLYRYAICFLNENSNDVF 524
           +FVTG+   LG W+    + +    E++NLW   + +P      Y Y +   N+ S+D+ 
Sbjct: 118 IFVTGDPVTLGCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDII 177

Query: 525 IR 530
            R
Sbjct: 178 WR 179


>03_02_0957 - 12710656-12711017,12711479-12711665
          Length = 182

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -2

Query: 352 NTFSFKGFISGTVTENCHCWEISSAFCSGSGSDIFFSGLVFCIFLSSRKNQRCIILILPL 173
           N  S  GF +  V   C    ++ A   GSG+     G +    L+   N RC +++   
Sbjct: 54  NAASVPGFPNAAVQLECGGRAVAGATADGSGAFAINLGKLTAATLTPLLNDRCRVVVTTP 113

Query: 172 FAIC 161
            A C
Sbjct: 114 LAAC 117


>06_01_1100 + 9032231-9032419,9033086-9033193
          Length = 98

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 309 SVTVPDINPLKEKVFVTGNTPELGEWDYTKIIMMDYDEASNLW 437
           +V V  I  L+  ++  G TPE+ E  YT ++++   +A++ W
Sbjct: 8   AVAVVRILILRVSIYDGGGTPEVTEASYTILVLLPPHDAADGW 50


>03_05_0207 -
           21985340-21985570,21986430-21986636,21999578-21999667,
           21999764-21999945,22000130-22001042,22003184-22003266,
           22004622-22004939,22005044-22005107
          Length = 695

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 285 LISQQWQFSVTVPDINPLKEKVFVTGNTPELGEWDYTKI--IMMDY-DEASNLWLKTLTI 455
           L+  +W+  +T P+ +P K  +   G T E+ + D  K+  +   Y DEA N+ +K L  
Sbjct: 592 LVCSKWEDEITKPEWHPFK-VIETAGQTKEIIKEDDGKLQALRAQYGDEACNVVVKALVE 650

Query: 456 PN 461
            N
Sbjct: 651 MN 652


>12_01_1109 -
           11726818-11727719,11728225-11728394,11730407-11730483,
           11730559-11730645,11730730-11730816,11731887-11731991,
           11732133-11732168,11733636-11733754,11733862-11734067,
           11735854-11735906,11735986-11736153,11736507-11736591,
           11737845-11738023,11738939-11739070,11739209-11739295,
           11739920-11739972,11740820-11740892,11741791-11742442,
           11743165-11743229
          Length = 1111

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 342 EKVFVTGNTPELGEWDYTKIIMMDYDEASNLWLKTLTIPNTCEVLYRYAI 491
           E V + G+T ELG W+      ++ +  +N W+  L +P    V +++ I
Sbjct: 51  EHVGIIGSTKELGSWEE----QVELEWTTNGWVCQLKLPGETLVEFKFVI 96


>11_01_0702 -
           5782202-5782277,5782692-5782760,5782878-5783026,
           5783119-5783250,5783343-5783671,5784166-5784172
          Length = 253

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +3

Query: 300 WQFSVTVPDINPLKEKVFVTGNTPELGEWDYTK 398
           W +++T  D++P +  +   G+  ++  WD+ K
Sbjct: 44  WSWTITTLDVHPTEPYLLSVGSQDQIKLWDWNK 76


>04_04_0725 -
           27581658-27581663,27582379-27582481,27582697-27583025,
           27583263-27583365,27583490-27583671,27584135-27584324,
           27584570-27584665,27584960-27585054,27585396-27585590
          Length = 432

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 351 TLSPLRDLYPERLLRIAIVGKLVQPFV 271
           TL PLRDL+P    +  + G  ++PF+
Sbjct: 335 TLQPLRDLFPNYYTKEMLAGNDLKPFL 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,771,250
Number of Sequences: 37544
Number of extensions: 346987
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)