Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16k18f
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0695 + 30990070-30990269,30990399-30990459,30990793-309910... 33 0.32
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281... 30 2.2
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827... 30 2.2
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636 29 2.9
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 29 2.9
07_03_0253 + 15853307-15855220 29 5.2
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 28 6.8
12_01_0929 - 9229172-9229483,9230009-9230359 28 9.0
04_01_0620 - 8151065-8151791,8152246-8152418 28 9.0
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 28 9.0
>02_05_0695 +
30990070-30990269,30990399-30990459,30990793-30991001,
30991295-30991382
Length = 185
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 284 ETKEQLQGILEKIEAMSDEEREEFMAKIKQGLMQKLNF 397
+TKE + E + SD+E+E+F ++++G +Q+ N+
Sbjct: 126 KTKETMHETKEAVVGESDDEKEKFKQRVEEGSLQEFNW 163
>08_02_0919 -
22627147-22627326,22627646-22627726,22627827-22628103,
22629451-22629755,22629835-22629987,22630318-22631076
Length = 584
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 188 FSEKVSEIVDNMDIKTVLKKMIDM--PPEGQD-NGETKEQLQGILEKIEAMSDEEREEFM 358
F + +E+ D DI+T ++ +D P Q NGE+ QLQ + E++ + EE E M
Sbjct: 411 FVDLSAELSDLEDIQTSGRRSLDTVNPRRRQRLNGESVAQLQQLEEQLLELEKEEEEHHM 470
Query: 359 AKIK 370
+++
Sbjct: 471 RRMQ 474
>08_02_0619 -
19382172-19382366,19382453-19382545,19382621-19382702,
19382793-19382903,19383323-19383681,19384330-19384533,
19384582-19384756,19384885-19385474,19385555-19385800
Length = 684
Score = 29.9 bits (64), Expect = 2.2
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Frame = +2
Query: 119 IQQQKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTV---LKKMIDMPPEGQ----- 274
++++KKM+D +K G +E+ +VD DI+ V L++++ G+
Sbjct: 261 LERRKKMSDLAKKNIYPHRTSGEVTEEGEMLVDCPDIQNVTTSLQQIVQKEKTGEFVPRR 320
Query: 275 DNGETKEQLQGILEKI--EAMSDEEREEFMAKIKQGLMQKLNFNLGQ 409
+ E E L G E EA S ++R+ + AK++Q + ++ + Q
Sbjct: 321 QHDELTEAL-GTAEHFGREAQSYKKRDAYKAKMRQEITDEVTQQVTQ 366
>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
Length = 950
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 320 IEAMSDEEREEFMAKIKQGLMQKLNFNLGQNIDLSGLETAIKEAIVQKLYMV 475
I A E +M +I +G++Q++ ++D LE ++KE + K Y++
Sbjct: 177 ITADGSPETSNWMKEILRGVLQQVRPGDAMDVDGQHLEASLKEYLKDKRYLI 228
>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
Length = 493
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/65 (41%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -3
Query: 353 TLPFPRRTLLRFSLRSPAIAPSFHHCPVPRVACQSFSSKPSL--C-PYYQRSRTPFRRKR 183
TLP R LLR LR PA A F P P A S P+L C SR P+ R
Sbjct: 87 TLPL-RLPLLRLWLRPPARAFLFLDGPAPAAAAASEPLPPNLRFCVSSTDASRFPYTHPR 145
Query: 182 RLSSA 168
L SA
Sbjct: 146 GLPSA 150
>07_03_0253 + 15853307-15855220
Length = 637
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 227 IKTVLKKMIDMPPEGQDNGETKEQLQGILEKIEAMSDE 340
I+ V + DM PE D G+T E ++ +AMS++
Sbjct: 226 IEPVFHDLPDMMPEQADAGDTTETTAAVVNLTDAMSEQ 263
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 104 GVFVCIQQQKKMADEVEKPTVSLNLGGAFSEKVSEI-VDNMDIKTVLKKMIDMPPEGQDN 280
GV IQQ + DE P+VS +G KV ++ +N I LK + P G
Sbjct: 614 GVPALIQQWEVSWDETLDPSVSYKIGQVVDAKVIQLDYNNNRIFLSLKDVKPNPSVGALE 673
Query: 281 GETKEQLQ--GILEKIEA 328
E+L G LE EA
Sbjct: 674 AVIGEELSLGGALEPAEA 691
>12_01_0929 - 9229172-9229483,9230009-9230359
Length = 220
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 260 PPEGQDNGETKEQLQGILEKIEAMSDEEREEFMAKIK 370
PP D+ TKE+L + S EER+E + K +
Sbjct: 68 PPPSSDHSPTKEELPRATAAVGRYSAEERQERIEKYR 104
>04_01_0620 - 8151065-8151791,8152246-8152418
Length = 299
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 263 PEGQDNGETKEQLQGILEKIEAMSDEER 346
P+G++ GE +E+ + + EK+ + E+R
Sbjct: 79 PDGEEEGEEEEEAEAVAEKVTNEAAEDR 106
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 128 QKKMADEVEKPTVSLNLGGAFSEKVSEIVDNMDIKTVLKKMIDMPPEGQDNGETKEQLQG 307
QK + E TVSL GGA VS IV DI T K D D G ++
Sbjct: 332 QKYIPSFTEHATVSLVTGGAIELPVSIIVGMGDIAT--KDAFDWALSYADAGRAFGEVSR 389
Query: 308 ILEKIEAMSDEEREE 352
++ + A+S RE+
Sbjct: 390 FMDDL-AVSQNGREK 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,529,421
Number of Sequences: 37544
Number of extensions: 333728
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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