Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16k17f
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106583-2|AAD03129.2| 255|Caenorhabditis elegans Hypothetical ... 275 2e-74
Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical ... 29 4.4
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 28 5.9
>AF106583-2|AAD03129.2| 255|Caenorhabditis elegans Hypothetical
protein F23C8.5 protein.
Length = 255
Score = 275 bits (674), Expect = 2e-74
Identities = 132/196 (67%), Positives = 161/196 (82%), Gaps = 1/196 (0%)
Frame = +2
Query: 104 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKEKKLASEVIAV 283
++LVGVKRV+DYAVKIRVKPD+SGVVT+GV+HSMNPFDEIA+EEAV++KEKKLA+EV+A
Sbjct: 2 KILVGVKRVVDYAVKIRVKPDRSGVVTEGVQHSMNPFDEIALEEAVKLKEKKLATEVVAF 61
Query: 284 SCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGK 463
S G ++ E LRTALA GAD+A+HV+V AE L+ HVAK L K+ + EK D V +GK
Sbjct: 62 SLGGPKSAEVLRTALAKGADKAVHVQVTDAEAGKLESFHVAKALQKIVEQEKFDAVFLGK 121
Query: 464 QAIDDDSNQTAQMTAALLDWPQGTFASKIEKTD-GALTITREIDGGLEVIKTKIPAVLSA 640
QAIDDDS+QTA + A LL+WPQ +ASK+E G + +TREIDGGL+ IK K+P VLSA
Sbjct: 122 QAIDDDSSQTAPILAGLLEWPQALYASKVEDAGAGHMKVTREIDGGLDTIKVKVPFVLSA 181
Query: 641 DLRLNEPRYATLPNIM 688
DLRLNEPRYATLPNIM
Sbjct: 182 DLRLNEPRYATLPNIM 197
>Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical
protein F36G9.13 protein.
Length = 917
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 110 LVGVKRVIDYAVKIRVKPDK-SGVVTDGVKHSMNPFDEIA--VEEAVRMKEKKLASEVIA 280
L GVK + ++ ++R DK V T+ H+M + +E+ + K+ K + I
Sbjct: 321 LSGVKTLTNFGSELRKLDDKWRPVTTENHYHTMKKMSALQNHLEKTMTSKKIKATVDRIK 380
Query: 281 VSCGPSQAQETLRTALAMGADRA 349
+CG A++ L + G D A
Sbjct: 381 DNCGTGDAEDGLTRKIREGVDNA 403
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 259 VSKRSHCSLLWTITSTGNSQNCSCDGCRSSYSC*SG 366
+S++ L+ T +S NS CS C + Y C SG
Sbjct: 163 LSRQQASGLVCTFSSCSNSNPCSVGTCNNGYCCSSG 198
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 259 VSKRSHCSLLWTITSTGNSQNCSCDGCRSSYSC*SG 366
+S++ L+ T +S NS CS C + Y C SG
Sbjct: 163 LSRQQASGLVCTFSSCSNSNPCSVGTCNNGYCCSSG 198
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +2
Query: 254 KKLASEVIAVSCGPSQAQETLRTALAMGADRAIHVEVA-GAEYDTLQPIHVAKILAKLSQ 430
KK + V+ G + + +L+ A A+ V++A A +D A +K ++
Sbjct: 254 KKSNATAFTVNLG-EEKEVSLQEAARTLAENRRKVKLAKSASHDRTPSTPDAIAASKTNK 312
Query: 431 DEKADLVIVGKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGG 598
+ + ++ GK AID+ SN+ + +++ P+ F ++ E + ++ +GG
Sbjct: 313 NYLLERLLTGKTAIDN-SNEEEYVEGEIVETPEEQFDARSEALTFVIDTSKRNNGG 367
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +2
Query: 254 KKLASEVIAVSCGPSQAQETLRTALAMGADRAIHVEVA-GAEYDTLQPIHVAKILAKLSQ 430
KK + V+ G + + +L+ A A+ V++A A +D A +K ++
Sbjct: 315 KKSNATAFTVNLG-EEKEVSLQEAARTLAENRRKVKLAKSASHDRTPSTPDAIAASKTNK 373
Query: 431 DEKADLVIVGKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGG 598
+ + ++ GK AID+ SN+ + +++ P+ F ++ E + ++ +GG
Sbjct: 374 NYLLERLLTGKTAIDN-SNEEEYVEGEIVETPEEQFDARSEALTFVIDTSKRNNGG 428
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +2
Query: 254 KKLASEVIAVSCGPSQAQETLRTALAMGADRAIHVEVA-GAEYDTLQPIHVAKILAKLSQ 430
KK + V+ G + + +L+ A A+ V++A A +D A +K ++
Sbjct: 279 KKSNATAFTVNLG-EEKEVSLQEAARTLAENRRKVKLAKSASHDRTPSTPDAIAASKTNK 337
Query: 431 DEKADLVIVGKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGG 598
+ + ++ GK AID+ SN+ + +++ P+ F ++ E + ++ +GG
Sbjct: 338 NYLLERLLTGKTAIDN-SNEEEYVEGEIVETPEEQFDARSEALTFVIDTSKRNNGG 392
>AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical
protein T05A8.5 protein.
Length = 378
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 572 LEHHQSFLSLMQMFLVANLIKQQSSVLSGWSHHL 471
L H+Q+ L+ ++ L LI+Q S +SG SH L
Sbjct: 344 LIHYQAKLTAQRVILDVQLIQQHSMAMSGSSHAL 377
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 283 LLWTITSTGNSQNCSCDGCRSSYSC*SG 366
L+ T +S NS CS C + Y C SG
Sbjct: 685 LVCTFSSCSNSNPCSVGTCNNGYCCSSG 712
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,611
Number of Sequences: 27780
Number of extensions: 330793
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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