Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16k15f
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 192 6e-50
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 191 1e-49
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 136 4e-33
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 1.7
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.0
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 27 4.0
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 25 9.2
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 192 bits (467), Expect = 6e-50
Identities = 89/194 (45%), Positives = 136/194 (70%), Gaps = 1/194 (0%)
Frame = +2
Query: 95 ILSGNSHPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNN 274
I+ G SHPEL LI+NRLG+ S+ N ET VEI +S+R K+++I+Q+G+ VN+
Sbjct: 6 IIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGSSTVND 65
Query: 275 NIMELLIMAYACKTSSASSIVGVIPYLPYSKQCKMRK-RGCIVSKLLAQMMCKSGLSHII 451
++MELLI+ ACK SA I V+PY PYSKQ KMRK R I ++++A ++ +G+ HII
Sbjct: 66 SLMELLIIISACKGGSAKRITAVMPYFPYSKQSKMRKYRDAITARMVANLLTVAGVDHII 125
Query: 452 TMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGSAKKATSYAERL 631
T+DLH ++QGFF PVDNL A P + ++I+ ++ D+ +V+V++NPG AK+ TS A+ L
Sbjct: 126 TLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRNVDDWEEAVVVSKNPGGAKRVTSLADTL 185
Query: 632 RLAIAVIHGEQKEA 673
L A+I+ +++ +
Sbjct: 186 NLDFALINTDRQRS 199
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 191 bits (465), Expect = 1e-49
Identities = 95/201 (47%), Positives = 144/201 (71%), Gaps = 2/201 (0%)
Frame = +2
Query: 77 STSDIVILSGNSHPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTG 256
+++ I I +GNSHPELA+ +A R+G+ G +V +NRET V I +S+R ++++I+QTG
Sbjct: 2 ASNSIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTG 61
Query: 257 TKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKQCKMRK-RGCIVSKLLAQMMCKS 433
+N+++MELLIM AC+++SA I +IP PY++Q K K R I ++L+A M+ +
Sbjct: 62 CGSINDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAPITARLVANMLQTA 121
Query: 434 GLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESIPDYRN-SVIVARNPGSAKKA 610
G +HIITMDLH +IQGFF+ PVDNL A P +L+YI+E+I N +VIV+ + G AK+A
Sbjct: 122 GCNHIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDAGGAKRA 181
Query: 611 TSYAERLRLAIAVIHGEQKEA 673
T+ A+RL L A+IH E+++A
Sbjct: 182 TALADRLDLDFALIHKERQKA 202
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 136 bits (328), Expect = 4e-33
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 25/219 (11%)
Frame = +2
Query: 86 DIVILSGNSHPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKD 265
++V+ SHP+L + I L + G + +N ET V I S+RG ++YI+ +
Sbjct: 3 NLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQ 62
Query: 266 VNNNIMELLIMAYACKTSSASSIVGVIPY-------------------------LPYSKQ 370
VN+++MELLIM ACKT+SA + V+P +P KQ
Sbjct: 63 VNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVVPCKKQ 122
Query: 371 CKMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQES 550
L+A ++ SG HIITMDLH + QGFFD PVDNL P L YI +
Sbjct: 123 TGYHPWIAQSGTLVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLKHYISLN 182
Query: 551 IPDYRNSVIVARNPGSAKKATSYAERLRLAIAVIHGEQK 667
IP+Y N+VIV+ + G AK+AT+ A+ L L A+IH ++
Sbjct: 183 IPNYHNAVIVSPDAGGAKRATAIADALGLDFALIHKNRR 221
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 86 DIVILSGNSHPELADLIANRLGVRKGGCSVYHKTNRE 196
D++ L N HP + +R G +G C VY +T+++
Sbjct: 100 DVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQD 136
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 128 DLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTG 256
DLI+ LG + GCS + E ++ AD IR ++ ++TG
Sbjct: 24 DLISRALGGQVLGCSDDFFASCENLINPADPIRKAGVF-VETG 65
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 452 TMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGSAKKATSYAE 625
T+ L QKEIQ FD D +PF + ++ IP + IV KKA AE
Sbjct: 208 TVKLKQKEIQEMFDTNKDAF-TNPFKGMFYEKPIP----AGIVIPPQAKLKKALKQAE 260
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 319 GSLTSVGHYKQFHYVV 272
GS HYKQ+HYVV
Sbjct: 286 GSRLKHSHYKQYHYVV 301
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 742 RYIHSTRPGYTWR*IPSINLITFGFLLFSMY 650
RY+H T G+ I ++ +ITF + + MY
Sbjct: 137 RYVHITGIGFVIHAIAALFVITFSYRPYLMY 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,196
Number of Sequences: 5004
Number of extensions: 74308
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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