Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k15f
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...   119   2e-27
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    56   2e-08
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042...    30   2.4  
01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915...    29   3.1  
08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257...    28   9.5  
05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266     28   9.5  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    28   9.5  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score =  119 bits (287), Expect = 2e-27
 Identities = 67/209 (32%), Positives = 117/209 (55%), Gaps = 2/209 (0%)
 Frame = +2

Query: 68  DGNSTSDIVILSGNSHPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYII 247
           DG   S + I SG ++  LA  IA+ LGV  G   +    + E  V++ +S+RG +++++
Sbjct: 84  DGRD-SRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLV 142

Query: 248 QTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSK-QCKMRKRGCIVSKLLAQMM 424
           Q     VN N+MEL +M  AC+ +SA SI  VIPY  Y++   K + R  I +KL A ++
Sbjct: 143 QPTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLL 202

Query: 425 CKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGSAK 604
            ++G   +I  D+H  +  G+FD PVD++   P +L Y+       ++ V+V+ + G   
Sbjct: 203 TEAGSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPDVGGVV 261

Query: 605 KATSYAERLRLA-IAVIHGEQKEAESDEV 688
           +A ++A++L  A +A++   ++     EV
Sbjct: 262 RARAFAKKLSDAPLAIVDKRRQGHNMSEV 290


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = +2

Query: 311 KTSSASSIVGVIPYLPYSK-QCKMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGF 487
           + +SA +I  VIPY  Y++   K + R  I +KL+A M+ ++G + ++  DLH  +  G+
Sbjct: 128 RRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQAMGY 187

Query: 488 FDCPVDNL 511
           FD PVD++
Sbjct: 188 FDIPVDHV 195


>04_04_0219 -
           23703579-23703747,23703836-23703944,23704170-23704272,
           23704365-23704396,23704855-23705072,23706295-23706618,
           23706982-23707069,23707179-23707263
          Length = 375

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 173 VYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMEL 289
           +Y +  RE ++ I ++     IYI + G  ++NN  M L
Sbjct: 257 IYPEGLRELLLHIKENYGNPTIYITENGVDEINNKTMRL 295


>01_04_0003 -
           14989160-14989445,14989673-14989807,14991418-14991508,
           14991571-14991712,14991924-14992403,14992610-14993548
          Length = 690

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 653 HGEQKEAESDEVDGRYSPPC 712
           H E+ EAE D+++GR S PC
Sbjct: 211 HDEKYEAEDDQMNGRNSSPC 230


>08_01_0306 -
           2570411-2570419,2570809-2570886,2571464-2571671,
           2573400-2573521,2573815-2573883,2573963-2574052,
           2574113-2574230,2574956-2575086,2575195-2575464,
           2577323-2577433,2577604-2578152
          Length = 584

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 29  LVGLSNRSQNCNMDGNSTSDIVILSGNSHPELADLIANRLGVRKGGCSVYHKTNRETIVE 208
           L+ +S   + C +D N TS  ++     +    D IA RLG+R+G   V+  +   T+ +
Sbjct: 370 LLDVSKLEELC-LDNNITSGFIV-----NLVKVDSIAERLGIRRGDVIVFQDSCCSTLPQ 423

Query: 209 IAD 217
           + D
Sbjct: 424 LED 426


>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
          Length = 360

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 212 ADSIRGKNIYIIQTGTKDV 268
           +D I GK++Y+I  GT DV
Sbjct: 161 SDEIAGKSLYVISAGTNDV 179


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 647 VIHGEQKEAESDEVDGRYSPPCIPRSRTMDVSVGVPGT 760
           V  G   E  S E+D      C+PRSR++ +S+   GT
Sbjct: 554 VFGGVTLENPSPEMDSEEPFLCLPRSRSVPISLSFGGT 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,976,066
Number of Sequences: 37544
Number of extensions: 452212
Number of successful extensions: 1151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)