Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16k08f
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 29 2.6
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 2.6
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 2.6
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 27 8.1
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 27 8.1
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 27 8.1
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 27 8.1
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 27 8.1
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 27 8.1
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 354 SPVQKLSTKRISLQCTDLGTLSLICPAVKHIC 449
S Q S+ + +CT +G++ L CP V +C
Sbjct: 415 SNCQTASSCTSNFECTSIGSMQLCCPTVASVC 446
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 QFATVRLVGGGVGSTFVTLQFRNSA-RRGYHFNVQIWGR*ASSVQPSNTYASVCDSVVLQ 477
+F V L GGVG + +T+QF +S Y ++ + R V + + D+ +
Sbjct: 3 EFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAGTE 62
Query: 478 YYSLLMDLY 504
+S + DLY
Sbjct: 63 QFSSMRDLY 71
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 312 GRELGHPYFPGSDGPDASTG 253
G E GHP PG DGP+ + G
Sbjct: 54 GGEPGHPGAPGQDGPEGAPG 73
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 312 GRELGHPYFPGSDGPDASTG 253
G E GHP PG DGP+ + G
Sbjct: 54 GGEPGHPGAPGQDGPEGAPG 73
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 312 GRELGHPYFPGSDGPDASTG 253
G E GHP PG DGP+ + G
Sbjct: 54 GGEPGHPGAPGQDGPEGAPG 73
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 119 PGQDGEDGSD-GQPGAPGNDGPD 140
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 120 PGSDGEDGAD-GQPGAPGNDGPD 141
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 182 PGSDGEDGAD-GQPGAPGNDGPD 203
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
P D DG + G P PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,282
Number of Sequences: 27780
Number of extensions: 209760
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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