Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k07f
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   4.0  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.9  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   9.2  

>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 146 HCNNKTNELRRLNKLLGNM*TIHICSENAANTTRSIYVCDATR 18
           H N +T     LNK++     +  CS       +S++ C+AT+
Sbjct: 114 HVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSVHYCEATK 156


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 621 NKNQYCSHYHKIPSPSFLQ*KQSCRT 544
           +KN++ SH + I SP +   K+SC T
Sbjct: 118 SKNKHPSHSNTIRSPPYKVKKESCHT 143


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 222 ASHLGLFFVLPCHLRLP 172
           AS LGL+FV  C  RLP
Sbjct: 62  ASFLGLYFVSQCAARLP 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,077
Number of Sequences: 5004
Number of extensions: 77122
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)