Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16k07f
(777 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 116 2e-28
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 116 2e-28
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 91 1e-20
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 25 0.79
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 25 0.79
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 25 1.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 116 bits (280), Expect = 2e-28
Identities = 55/133 (41%), Positives = 71/133 (53%)
Frame = +3
Query: 222 PDRAKWGRPLEFILACLGYAVGLGNVWRFPYLSYKNGGGAXXXXXXXXXXXXXXXXXYLE 401
PDR W +EFIL+ +G A+GLGN+WRFPYL YKNGGGA +E
Sbjct: 17 PDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMFLME 76
Query: 402 LYIGQYTGLGPLKAFSAISPFFSGLGYCTLXXXXXXXXXXXXXXAWTLFYTIVSIGGNLG 581
L +GQ +G L F I+P F G+GY T AW LFY +VS+ +L
Sbjct: 77 LSLGQMMTIGGLGVFK-IAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLP 135
Query: 582 WGSCDNDYNTDFC 620
W +C N +NT +C
Sbjct: 136 WRTCGNPWNTRYC 148
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 116 bits (280), Expect = 2e-28
Identities = 55/133 (41%), Positives = 71/133 (53%)
Frame = +3
Query: 222 PDRAKWGRPLEFILACLGYAVGLGNVWRFPYLSYKNGGGAXXXXXXXXXXXXXXXXXYLE 401
PDR W +EFIL+ +G A+GLGN+WRFPYL YKNGGGA +E
Sbjct: 70 PDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMFLME 129
Query: 402 LYIGQYTGLGPLKAFSAISPFFSGLGYCTLXXXXXXXXXXXXXXAWTLFYTIVSIGGNLG 581
L +GQ +G L F I+P F G+GY T AW LFY +VS+ +L
Sbjct: 130 LSLGQMMTIGGLGVFK-IAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLP 188
Query: 582 WGSCDNDYNTDFC 620
W +C N +NT +C
Sbjct: 189 WRTCGNPWNTRYC 201
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 90.6 bits (215), Expect = 1e-20
Identities = 46/118 (38%), Positives = 58/118 (49%)
Frame = +3
Query: 288 LGNVWRFPYLSYKNGGGAXXXXXXXXXXXXXXXXXYLELYIGQYTGLGPLKAFSAISPFF 467
L NVWRFPYL YKNGGGA ++EL +GQ +G L F I+P F
Sbjct: 1 LANVWRFPYLCYKNGGGAFLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFK-IAPLF 59
Query: 468 SGLGYCTLXXXXXXXXXXXXXXAWTLFYTIVSIGGNLGWGSCDNDYNTDFCYSGEYDR 641
G+GY AW +FY +S+ L WGSC+N +NT C + YDR
Sbjct: 60 KGIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVN-PYDR 116
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 25.0 bits (52), Expect = 0.79
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 570 GNLGWGSCDNDYNTDFCYSGEYDRVCRENNTE 665
GN+ TD Y+G D++ RE NTE
Sbjct: 10 GNIHMSDVIEVIETDTKYNGREDQIPREMNTE 41
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 25.0 bits (52), Expect = 0.79
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 570 GNLGWGSCDNDYNTDFCYSGEYDRVCRENNTE 665
GN+ TD Y+G D++ RE NTE
Sbjct: 10 GNIHMSDVIEVIETDTKYNGREDQIPREMNTE 41
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 24.6 bits (51), Expect = 1.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 500 QHHFNLLYDHCGLDVVLHD 556
QH+ N+L D C D++ +D
Sbjct: 320 QHNLNILVDMCEQDIIQND 338
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 766 SKQYLSSRGSNPDLSQISPMLMHCLIKNVRS 674
S +S N +SQ+SP+ M L+ VRS
Sbjct: 373 STALMSQPPPNFGVSQVSPVSMSALVSAVRS 403
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 438 IVFTLFTVLATIVILCRAP 456
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 438 IVFTLFTVLATIVILCRAP 456
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 438 IVFTLFTVLATIVILCRAP 456
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 438 IVFTLFTVLATIVILCRAP 456
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 438 IVFTLFTVLATIVILCRAP 456
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 438 IVFTLFTVLATIVILCRAP 456
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 506 IVFTLFTVLATIVILCRAP 524
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 638 IVFSAVTKISIVVIITRSP 582
IVF+ T ++ +VI+ R+P
Sbjct: 506 IVFTLFTVLATIVILCRAP 524
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,078
Number of Sequences: 438
Number of extensions: 6185
Number of successful extensions: 28
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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