Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16k02f
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.29 
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.88 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    26   6.2  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.2  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.2  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   8.2  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 219 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 332
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 17  VLKPIGRKWIRLYAF--CCFLLGTL 85
           +++ +GRKWI++  F  CC L G L
Sbjct: 423 LIEVMGRKWIQIQGFLICCLLFGVL 447


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 251 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 388
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 259 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHCCGFSIRCKVNYPQN 89
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C    I  +   P+N
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYCHKLHICHRDLKPEN 138


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 249 RTKRPHSDPPSLTASNRVSRTWTPASVS 332
           R  RP  +PP L+ASN    T  P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 383 IIEDYHNGFKKTDKHPPKNW 442
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 514 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 642
           P+   VP  P P  VPV  + GQ L  PV P        LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 113 PNRKAATMVDAATLEKLEA---GFSKLQGSDSKSLLKKYLTREV 235
           PN+K A  V   +LEK++       ++ G    SL+K+ L  ++
Sbjct: 102 PNKKIAGQVSMQSLEKIKGVPEAAHRIAGESQASLVKRTLAEQI 145


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 610 GRAQGHVLPPHRHVEGDPAAAHRRPLPVQGG 702
           GR Q  VLP       DPAA   +PLP + G
Sbjct: 513 GRCQSMVLPIMNKWTVDPAAKDVKPLPRKVG 543


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 464 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 586
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 264 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLL 115
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF++
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFII 566


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 234 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 118
           +SLV++     ++     +LKP + F  V A   VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,377
Number of Sequences: 5004
Number of extensions: 56453
Number of successful extensions: 231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)