Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16k02f
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-4|CAB00062.1| 360|Caenorhabditis elegans Hypothetical pr... 254 5e-68
AF003148-10|AAB54206.2| 427|Caenorhabditis elegans Hypothetical... 248 2e-66
AF043703-6|AAK21503.1| 399|Caenorhabditis elegans Hypothetical ... 248 4e-66
U41543-2|AAO21426.1| 359|Caenorhabditis elegans Hypothetical pr... 247 7e-66
U41543-1|AAB37022.2| 396|Caenorhabditis elegans Hypothetical pr... 247 7e-66
Z83109-2|CAB05517.1| 372|Caenorhabditis elegans Hypothetical pr... 225 2e-59
AF106575-6|AAC78175.2| 244|Caenorhabditis elegans Hypothetical ... 76 3e-14
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 31 1.1
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 30 1.4
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 29 2.5
Z73911-4|CAA98141.2| 625|Caenorhabditis elegans Hypothetical pr... 29 4.4
U50070-2|AAR85908.1| 592|Caenorhabditis elegans Forkhead transc... 29 4.4
U50070-1|AAR85907.1| 778|Caenorhabditis elegans Forkhead transc... 29 4.4
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 29 4.4
Z69361-3|CAA93289.1| 533|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z68882-20|CAA93112.1| 533|Caenorhabditis elegans Hypothetical p... 28 5.8
U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical pr... 28 5.8
U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical pr... 28 5.8
U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical ... 28 5.8
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z75714-4|CAB00062.1| 360|Caenorhabditis elegans Hypothetical
protein ZC434.8 protein.
Length = 360
Score = 254 bits (622), Expect = 5e-68
Identities = 120/192 (62%), Positives = 155/192 (80%), Gaps = 4/192 (2%)
Frame = +2
Query: 155 EKLEAGFSKLQG-SDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGI 331
+ +E ++KLQG SD SLLKK+LT++V K+KKT G+TLLD IQSG ENLDSGVGI
Sbjct: 9 KSIEEVYTKLQGASDCSSLLKKHLTKDVVAKNKSKKTRLGATLLDVIQSGGENLDSGVGI 68
Query: 332 YAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGD--VDTLGNLDPAGEFVVSTRV 505
YAPDAESY++FA+LF+P+IE+YHNGFK TD P + G+ V L +LDP G+F+VSTR+
Sbjct: 69 YAPDAESYTLFADLFNPVIEEYHNGFKATDTQPAMDLGEKNVGELADLDPEGKFIVSTRI 128
Query: 506 RCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGELKGTFYPLTGMSKETQQQLIDD 682
RCGRSL+GYPFNPCL+E+ YK ME ++ +S+ + ELKGT+YPLTGM +ET+++LI D
Sbjct: 129 RCGRSLQGYPFNPCLSETNYKMMETRMKEIFNSITDPELKGTYYPLTGMDEETKKKLIAD 188
Query: 683 HFLFKEGDRFLQ 718
HFLFKEGDRFL+
Sbjct: 189 HFLFKEGDRFLK 200
>AF003148-10|AAB54206.2| 427|Caenorhabditis elegans Hypothetical
protein F32B5.1 protein.
Length = 427
Score = 248 bits (608), Expect = 2e-66
Identities = 124/214 (57%), Positives = 156/214 (72%), Gaps = 7/214 (3%)
Frame = +2
Query: 98 VVYFTPNR-KAATMVDAATLEKLEAGFSKLQGSDS---KSLLKKYLTREVFDSLKNKKTS 265
V TP + +A + VDAAT++K+E ++KL G + KSLLKK+LT+EV + LK K+T
Sbjct: 55 VYTLTPQQLQAKSEVDAATIKKIEEAYAKLNGPEGAKCKSLLKKHLTKEVVEKLKTKRTK 114
Query: 266 FGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWG 445
G+TL DCI+SGV NLD+GVG+YAPDAE+Y++FA LFD IIEDYH GF K PP + G
Sbjct: 115 VGATLYDCIRSGVYNLDAGVGVYAPDAEAYTLFAPLFDKIIEDYH-GFSPKQKQPPVDLG 173
Query: 446 DVDT--LGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGE 616
+ T LDP G+++ STR+RCGRSL+GYPFNPCLT+ Y EME KV S + E
Sbjct: 174 EGKTKEFPPLDPKGKYIKSTRIRCGRSLKGYPFNPCLTQDNYLEMEGKVKKAFSEYSDKE 233
Query: 617 LKGTFYPLTGMSKETQQQLIDDHFLFKEGDRFLQ 718
LKG +YPL GM K+TQ+QLI DHFLFKEGDR LQ
Sbjct: 234 LKGKYYPLDGMGKDTQKQLIADHFLFKEGDRHLQ 267
>AF043703-6|AAK21503.1| 399|Caenorhabditis elegans Hypothetical
protein W10C8.5 protein.
Length = 399
Score = 248 bits (606), Expect = 4e-66
Identities = 123/214 (57%), Positives = 156/214 (72%), Gaps = 7/214 (3%)
Frame = +2
Query: 98 VVYFTPNR-KAATMVDAATLEKLEAGFSKLQGSDS---KSLLKKYLTREVFDSLKNKKTS 265
V TP + +A + VDAAT++K+E ++KL G + KSLLKK+LT++V + LK K+T
Sbjct: 27 VYTLTPQQLQAKSEVDAATIKKIEEAYAKLNGPEGAKCKSLLKKHLTKDVVEKLKTKRTK 86
Query: 266 FGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWG 445
G+TL DCI+SGV NLD+GVG+YAPDAE+Y++FA LFD IIEDYH GF K PP + G
Sbjct: 87 LGATLYDCIRSGVYNLDAGVGVYAPDAEAYTLFAPLFDKIIEDYH-GFSPKQKQPPVDLG 145
Query: 446 DVDT--LGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGE 616
+ T LDP G+++ STR+RCGRSL+GYPFNPCLT+ Y EME KV S + E
Sbjct: 146 EGKTKEFPPLDPKGKYIKSTRIRCGRSLKGYPFNPCLTQDNYLEMEGKVKKAFSEYSDKE 205
Query: 617 LKGTFYPLTGMSKETQQQLIDDHFLFKEGDRFLQ 718
LKG +YPL GM K+TQ+QLI DHFLFKEGDR LQ
Sbjct: 206 LKGKYYPLDGMGKDTQKQLIADHFLFKEGDRHLQ 239
>U41543-2|AAO21426.1| 359|Caenorhabditis elegans Hypothetical
protein F46H5.3b protein.
Length = 359
Score = 247 bits (604), Expect = 7e-66
Identities = 118/198 (59%), Positives = 148/198 (74%), Gaps = 4/198 (2%)
Frame = +2
Query: 137 VDAATLEKLEAGFSKLQGS-DSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENL 313
V + K+E G++KLQ + + SLLKKYLT+EV D LK+KKT G+ LLD IQSGV NL
Sbjct: 3 VSPDVIAKIEEGYAKLQAAPECHSLLKKYLTKEVVDQLKDKKTKLGANLLDVIQSGVANL 62
Query: 314 DSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDT--LGNLDPAGEF 487
DSGVG+YAPDAE+Y++F LFDP+I+DYHNGF K P + G+ T L +LDP G+F
Sbjct: 63 DSGVGVYAPDAEAYTLFKPLFDPLIQDYHNGFAPDAKQPNTDLGEGKTSALVDLDPEGKF 122
Query: 488 VVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGELKGTFYPLTGMSKETQ 664
+ STR+RCGRSL+GYPFNPCL+E+ Y EME KV ++ + EL G ++PL GM+KE Q
Sbjct: 123 INSTRIRCGRSLQGYPFNPCLSEANYLEMESKVKAIFDNITDPELAGKYFPLDGMTKEIQ 182
Query: 665 QQLIDDHFLFKEGDRFLQ 718
QLI DHFLFKEGDRFLQ
Sbjct: 183 DQLIKDHFLFKEGDRFLQ 200
>U41543-1|AAB37022.2| 396|Caenorhabditis elegans Hypothetical
protein F46H5.3a protein.
Length = 396
Score = 247 bits (604), Expect = 7e-66
Identities = 118/198 (59%), Positives = 148/198 (74%), Gaps = 4/198 (2%)
Frame = +2
Query: 137 VDAATLEKLEAGFSKLQGS-DSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENL 313
V + K+E G++KLQ + + SLLKKYLT+EV D LK+KKT G+ LLD IQSGV NL
Sbjct: 40 VSPDVIAKIEEGYAKLQAAPECHSLLKKYLTKEVVDQLKDKKTKLGANLLDVIQSGVANL 99
Query: 314 DSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDT--LGNLDPAGEF 487
DSGVG+YAPDAE+Y++F LFDP+I+DYHNGF K P + G+ T L +LDP G+F
Sbjct: 100 DSGVGVYAPDAEAYTLFKPLFDPLIQDYHNGFAPDAKQPNTDLGEGKTSALVDLDPEGKF 159
Query: 488 VVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGELKGTFYPLTGMSKETQ 664
+ STR+RCGRSL+GYPFNPCL+E+ Y EME KV ++ + EL G ++PL GM+KE Q
Sbjct: 160 INSTRIRCGRSLQGYPFNPCLSEANYLEMESKVKAIFDNITDPELAGKYFPLDGMTKEIQ 219
Query: 665 QQLIDDHFLFKEGDRFLQ 718
QLI DHFLFKEGDRFLQ
Sbjct: 220 DQLIKDHFLFKEGDRFLQ 237
>Z83109-2|CAB05517.1| 372|Caenorhabditis elegans Hypothetical
protein F44G3.2 protein.
Length = 372
Score = 225 bits (551), Expect = 2e-59
Identities = 114/200 (57%), Positives = 138/200 (69%), Gaps = 6/200 (3%)
Frame = +2
Query: 137 VDAATLEKLEAGFSKLQGSDS---KSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVE 307
VD T++K+E + L G D SLLKK LT++V + LK K T G+ L DCI+SGV
Sbjct: 14 VDPVTIKKIEEAYVMLNGPDGAKCSSLLKKNLTKDVIEKLKTKSTKLGANLYDCIRSGVY 73
Query: 308 NLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDT--LGNLDPAG 481
LD+ VG+YAPDAE+Y++FA LFD IIEDYH G K PP + G+ T LDP G
Sbjct: 74 CLDALVGVYAPDAEAYTLFAPLFDKIIEDYH-GLGPDQKQPPVDLGEGKTKEFPPLDPKG 132
Query: 482 EFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGELKGTFYPLTGMSKE 658
+++ STR+RCGRSL GY FNPCLTE Y EME+KV S + ELKGT+YPL GMSK+
Sbjct: 133 KYIKSTRIRCGRSLNGYQFNPCLTEDNYLEMEEKVKKAFSEFSDEELKGTYYPLDGMSKD 192
Query: 659 TQQQLIDDHFLFKEGDRFLQ 718
TQ QLI DHFLFKEGDR LQ
Sbjct: 193 TQNQLIADHFLFKEGDRHLQ 212
>AF106575-6|AAC78175.2| 244|Caenorhabditis elegans Hypothetical
protein K04F1.1 protein.
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 4/177 (2%)
Frame = +2
Query: 122 KAATMVDAATLEKLEAGFSKLQGSDS---KSLLKKYLTREVFDSLKNKKTSFGSTLLDCI 292
+A + VDAAT++K+E + KL G + KSLL+KYLT+++ + LK K T G+++ DCI
Sbjct: 86 QAKSEVDAATIKKIEEAYVKLNGPEGAKCKSLLRKYLTKDIVEKLKTKCTKLGASVYDCI 145
Query: 293 QSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLD 472
+G+ + G+ F LF+ IED++ GF +K PP + G+
Sbjct: 146 LTGLRFVRQGLR-----------FVALFNKNIEDFY-GFSPKEKQPPVDLGE-------- 185
Query: 473 PAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSL-EGELKGTFYPL 640
G++ E P +P + Y EME KV S ELK +YPL
Sbjct: 186 -------------GKTKEFPPLDPNGNQENYLEMEGKVKRDFSEYSHKELKRKYYPL 229
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 177 ASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVST--RRTPS 350
AS+R +LS R TLP ++ R+ D P +S R TPAS +T R+ S
Sbjct: 257 ASNRHTSLSAGMRPTLPPMTPSSKRSSSAKRDAPLQQSSTPQQRLKTPASTTTTASRSGS 316
Query: 351 RT 356
RT
Sbjct: 317 RT 318
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 231 KYSTA*RTKRPHSDPPSLTAS---NRVSRTWTPASVSTRRTP 347
K S R PHS P++++S N + +WTP+++S TP
Sbjct: 88 KLSPPRRQSNPHSSLPAISSSTVKNEPTDSWTPSALSNDPTP 129
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 552 VRQGLKGYPSSERPQRTRVETTNSPAGSRLP-SVSTSPQFLGGCLSV 415
VR+ + GY + + ++++TN+P SRLP + Q LGG L +
Sbjct: 47 VRKSIMGYRGKRKTDQ-QLKSTNNPTSSRLPLNTKNVAQALGGRLHI 92
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -2
Query: 219 YFFSSDLE--SDPWSLLKPASNFSRVAASTIVAAFLLGVK*TTRKINNV-PSKKQQNAYN 49
YFF LE S W +LK +F A +A F K T+K N P + A++
Sbjct: 702 YFFIGKLEAKSSQWDILKVVESFYEAACGCELAGFYYPQKVQTKKQTNFEPLEVHYQAFS 761
Query: 48 LIH 40
++
Sbjct: 762 AVY 764
>Z73911-4|CAA98141.2| 625|Caenorhabditis elegans Hypothetical
protein T12A7.1 protein.
Length = 625
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = +2
Query: 488 VVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSLEGELKGTFYPLTGMSKETQQ 667
++ST+ CG++++ C ++K+ +D + ++L T G + TQ
Sbjct: 231 LISTQALCGKNMDRPIIIECYDHEKFKKQDDIIGTAQTTL-----NTLIEQAGGGESTQI 285
Query: 668 QLIDDHFLFKEGDRF 712
LI++ K+G ++
Sbjct: 286 PLINEKKKLKKGAKY 300
>U50070-2|AAR85908.1| 592|Caenorhabditis elegans Forkhead
transcription factor familyprotein 7, isoform b protein.
Length = 592
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -2
Query: 471 SRLPSVSTSPQFLGGCLSVFLKPLW*SSMIGSNSSANTEYDSASGA*IPTPESKFSTP 298
S +PSVS+ P FL LS +P + S SAS P P+SK P
Sbjct: 290 STVPSVSSMPSFLNHQLSTSSQPSSQQASGSSGPLLQRAASSASTETSPNPDSKSFVP 347
>U50070-1|AAR85907.1| 778|Caenorhabditis elegans Forkhead
transcription factor familyprotein 7, isoform a protein.
Length = 778
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -2
Query: 471 SRLPSVSTSPQFLGGCLSVFLKPLW*SSMIGSNSSANTEYDSASGA*IPTPESKFSTP 298
S +PSVS+ P FL LS +P + S SAS P P+SK P
Sbjct: 476 STVPSVSSMPSFLNHQLSTSSQPSSQQASGSSGPLLQRAASSASTETSPNPDSKSFVP 533
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 261 PHSDPPSLTASNRVSRTW---TPASVSTRRTPSRTPCSP 368
P + S T + R +TW TP + +TR+TP T P
Sbjct: 382 PTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPP 420
>Z69361-3|CAA93289.1| 533|Caenorhabditis elegans Hypothetical
protein T13H10.1 protein.
Length = 533
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 624 PLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPA 475
P P R ++ E S+S +S +G+K + RP RTR+ NSP+
Sbjct: 424 PPFEPERQEKTQEMRKSMS---NSAEEGVK---KNRRPVRTRIRNGNSPS 467
>Z68882-20|CAA93112.1| 533|Caenorhabditis elegans Hypothetical
protein T13H10.1 protein.
Length = 533
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 624 PLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPA 475
P P R ++ E S+S +S +G+K + RP RTR+ NSP+
Sbjct: 424 PPFEPERQEKTQEMRKSMS---NSAEEGVK---KNRRPVRTRIRNGNSPS 467
>U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical
protein B0252.3a protein.
Length = 297
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 53 YAFCCFLLGTLFILRVVYFTPNRKAATMVDAATLEKLEAGFSKLQG 190
Y C + +F+ ++Y T +V + EK+EA K++G
Sbjct: 21 YLMFCISVPNIFVALLIYMTVPESLHFLVSSQQNEKIEAWLEKIRG 66
>U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical
protein B0252.3c protein.
Length = 464
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 53 YAFCCFLLGTLFILRVVYFTPNRKAATMVDAATLEKLEAGFSKLQG 190
Y C + +F+ ++Y T +V + EK+EA K++G
Sbjct: 188 YLMFCISVPNIFVALLIYMTVPESLHFLVSSQQNEKIEAWLEKIRG 233
>U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical
protein B0252.3b protein.
Length = 484
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 53 YAFCCFLLGTLFILRVVYFTPNRKAATMVDAATLEKLEAGFSKLQG 190
Y C + +F+ ++Y T +V + EK+EA K++G
Sbjct: 208 YLMFCISVPNIFVALLIYMTVPESLHFLVSSQQNEKIEAWLEKIRG 253
>AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical
protein Y39E4B.7 protein.
Length = 472
Score = 28.3 bits (60), Expect = 5.8
Identities = 34/116 (29%), Positives = 47/116 (40%)
Frame = +3
Query: 24 SRSAVSG*DYTRFAVSYSAHCLFCG*FTLHLIEKPQQWSTPQPSRNWRLVSASSRDPTLS 203
S S SG D +R V T +L E + TP+P+ + R SA D T+
Sbjct: 349 SMSMSSGCDESRITVGGGGGGAEADGSTCNLFEMERGGGTPRPNSSLR--SARVHDETVD 406
Query: 204 RC*RSTLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPS 371
S Y A + H +T + ++ S S RRTPSRT SP+
Sbjct: 407 T--PSATHQSYEEA-LEEALHGPASPVTTEDSIN------SKSGRRTPSRTATSPT 453
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 27.9 bits (59), Expect = 7.7
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 65 CFLLGTLFILR-VVYFTPNRKAATMVDAATLEKLEAGFSKLQGSDSKSLLKKYLTREVFD 241
C LL L V F PN+K V + L A + + ++S + L+ YL+
Sbjct: 394 CQLLAKLIPKNSAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLS----- 448
Query: 242 SLKNKKTSFGSTLLDCIQSGVENLDSGV 325
N + L CI SGV SG+
Sbjct: 449 --DNDDERMDAVLKQCILSGVAYHHSGL 474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,038
Number of Sequences: 27780
Number of extensions: 321965
Number of successful extensions: 1385
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -