Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j23r
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.93 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.93 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 859 FFDPAGGRRPNFISTXILIFWDIPEVYILILPGFGIISH 743
           F+D A G  P+   T  LI W I +V   +    GI+S+
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVA---GIVSY 231


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 859 FFDPAGGRRPNFISTXILIFWDIPEVYILILPGFGIISH 743
           F+D A G  P+   T  LI W I +V   +    GI+S+
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVA---GIVSY 231


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 861 HFLILLEGGDPILYQXLF*FFGTSLKFIF 775
           H L+ ++ GD +       +FG ++ F+F
Sbjct: 163 HLLMTVDAGDSMFVHTFGAYFGLAISFVF 191


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 880 IENLNTSFFDPAGGRRPNFISTXIL 806
           +    T FF P   RR   +ST IL
Sbjct: 268 VNGYRTLFFHPLSSRREFAVSTRIL 292


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 484 GFVFLFTVGGLTGVI 440
           G V +  VGGLTG+I
Sbjct: 201 GSVVIHVVGGLTGLI 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,075
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)