Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j22r
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.85 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.85 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  WSSQKTSILSFVGITNGMGTSCRY 108
           WSS+   ILS VG+  G+G   R+
Sbjct: 22  WSSKIEFILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  WSSQKTSILSFVGITNGMGTSCRY 108
           WSS+   ILS VG+  G+G   R+
Sbjct: 75  WSSKIEFILSVVGLAIGLGNLWRF 98


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 448 DWENNVLRLGTNDAQYVEVIH 386
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 250 AATITHGKHYGNQCSTEAEITANN 179
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 697 LRSGNYNVIVVDWSSF 650
           +++G+Y V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 697 LRSGNYNVIVVDWSSF 650
           +++G+Y V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 772 DIVVIIHGHSGTATTTINPIVK 707
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 103 RYLLGTFQTHALQVWQYPFQLEILGNYLRLSP 198
           R++    + HA  ++QY F + I     R+SP
Sbjct: 350 RHVQAEAEKHAAMLYQYNFNIIISEPTERISP 381


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 772 DIVVIIHGHSGTATTTINPIVK 707
           +IVVI H  SG +TTT + I K
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,794
Number of Sequences: 438
Number of extensions: 5744
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)