Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16j16f
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical... 125 4e-29
AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical ... 89 5e-18
U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical pr... 65 6e-11
U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical pr... 30 1.7
U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 29 3.0
Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z83317-3|CAB05897.1| 217|Caenorhabditis elegans Hypothetical pr... 28 9.1
U40416-1|AAA81410.2| 822|Caenorhabditis elegans Protein kinase ... 28 9.1
AF403714-1|AAK97497.1| 822|Caenorhabditis elegans serine/threon... 28 9.1
AF040655-2|AAB95042.2| 306|Caenorhabditis elegans Serpentine re... 28 9.1
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 28 9.1
>AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical
protein Y56A3A.19 protein.
Length = 133
Score = 125 bits (301), Expect = 4e-29
Identities = 63/125 (50%), Positives = 83/125 (66%)
Frame = +3
Query: 135 RTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVL 314
R +V+ L TV+++ S ++ L IR+YS PLT ++ R++
Sbjct: 3 RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61
Query: 315 LVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDI 494
LVL LYDKI+ ++LT+DS F DLGLDSLDHVEV+MAME+EFGFEIPDGDA+R P+DI
Sbjct: 62 LVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMAMEEEFGFEIPDGDADRFKTPRDI 121
Query: 495 VQYIA 509
QYIA
Sbjct: 122 FQYIA 126
>AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical
protein F16B4.6 protein.
Length = 246
Score = 88.6 bits (210), Expect = 5e-18
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Frame = +3
Query: 276 PPLTLDLIKSRVL-LVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEI 452
P L++ V V+ I+ +LT+DS F DLGLD LDHVEV+MA+E+EFGFEI
Sbjct: 161 PEKAAKLLQKEVFRFVIVTSSAISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEI 220
Query: 453 PDGDAERLVRPKDIVQYIA 509
PDGDA+R P+DI+QYIA
Sbjct: 221 PDGDADRFKTPRDILQYIA 239
>U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical
protein F37C12.3 protein.
Length = 145
Score = 64.9 bits (151), Expect = 6e-11
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Frame = +3
Query: 276 PP--LTLDLIKSRVLLVLQLYDKINPEQ---LTVDSHFMNDLGLDSLDHVEVIMAMEDEF 440
PP LT ++ RVL ++ +D+ ++ L +D+ D G DSLD VE++MA+EDEF
Sbjct: 56 PPKQLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEF 115
Query: 441 GFEIPDGDAERLVRPKDIVQYI 506
GFEIP D+++ +D +YI
Sbjct: 116 GFEIPLQDSDKFKTIRDAFKYI 137
>U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical
protein M01H9.2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 163 PLRCSKSSAQLKPLSKYTKVRPFRMGTRNMVSAST 267
P C K A+LKP SK TK P RN + ST
Sbjct: 78 PRLCGKCYAKLKPDSKRTKTIPVTQFKRNPAATST 112
>U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical
protein C56C10.7a protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 506
F+ + LD H V +A EDEFG D +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +3
Query: 192 IKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSH 371
+K A KIY + + NG E K + L+K ++ + +L INP + +
Sbjct: 1644 LKDAEKIYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAA 1703
Query: 372 FMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLV 479
L +DS DH++ MED E + D + ++
Sbjct: 1704 AQRGLAMDSDDHMD---EMEDHPTEEEEEDDDDEIM 1736
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +3
Query: 192 IKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSH 371
+K A KIY + + NG E K + L+K ++ + +L INP + +
Sbjct: 1644 LKDAEKIYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAA 1703
Query: 372 FMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLV 479
L +DS DH++ MED E + D + ++
Sbjct: 1704 AQRGLAMDSDDHMD---EMEDHPTEEEEEDDDDEIM 1736
>Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical
protein F32A11.1 protein.
Length = 319
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 218 KSGPSEWERETWYPQVQRWPS 280
+ G WER+TW VQ +PS
Sbjct: 225 RRGVGVWERDTWVESVQSYPS 245
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 272 TAVLADTMFLVPILKGLTFVYFDSGFN 192
T ++ TMFL P+ G T VYF G++
Sbjct: 187 TLIICATMFLHPLSMGSTNVYFVPGYH 213
>Z83317-3|CAB05897.1| 217|Caenorhabditis elegans Hypothetical
protein F13G11.2 protein.
Length = 217
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 272 TAVLADTMFLVPILKGLTFVYFDSGFN 192
T ++ TMFL P+ G T VYF G++
Sbjct: 189 TLIICATMFLHPLSMGSTNVYFVPGYH 215
>U40416-1|AAA81410.2| 822|Caenorhabditis elegans Protein kinase
protein 29 protein.
Length = 822
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 171 TQRSKDDMLRTFYTLL--ISVIDHRKHFGKYSQQPFLQAHEMLY 46
T RS DD +R+ L VID K + PF ++HEM+Y
Sbjct: 715 TTRSIDDRVRSIVCTLPFTEVIDELKASLNILKIPFSESHEMVY 758
>AF403714-1|AAK97497.1| 822|Caenorhabditis elegans serine/threonine
kinase KIN-29 protein.
Length = 822
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 171 TQRSKDDMLRTFYTLL--ISVIDHRKHFGKYSQQPFLQAHEMLY 46
T RS DD +R+ L VID K + PF ++HEM+Y
Sbjct: 715 TTRSIDDRVRSIVCTLPFTEVIDELKASLNILKIPFSESHEMVY 758
>AF040655-2|AAB95042.2| 306|Caenorhabditis elegans Serpentine
receptor, class x protein111 protein.
Length = 306
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 557 FWTSCIFETITNQTQNCIFLIYNWPKSIV 643
F CI +T++N ++L+YN P +++
Sbjct: 42 FHVMCISKTVSNSLHILVYLLYNGPSALL 70
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 393 DSLDHVEVIMAMEDEFGFEIPDGDAERLVR 482
+ LD VE++M++ED G + + D+ LVR
Sbjct: 172 EKLDSVELVMSVEDIIGVVLEELDSVELVR 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,039,421
Number of Sequences: 27780
Number of extensions: 365431
Number of successful extensions: 942
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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