Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16j14f
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 0.74
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 28 1.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 5.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 6.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 9.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.1
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 25 9.1
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = -1
Query: 738 TDQEHENLERCLIIIIARQP-SVFRKKV 658
T+ EH+NL + ++++++ QP S FR+ V
Sbjct: 881 TNDEHQNLHKEMLVVLSSQPKSTFRRAV 908
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 499 QKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDDLQHLHLFTEYG 678
+ + VV+ D G S++ DSS +FA +L + ++ ++ D Q LH+F ++G
Sbjct: 585 EDIEVVVFDMVGV----SSI-DSSALFAFQRILKEYVEHQVEVHLVSLDPQVLHIFEKHG 639
Query: 679 RL 684
L
Sbjct: 640 LL 641
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 592 LLSSIQIYNLKENIKEDDLQHLHLFTEYGR 681
LLS ++++ + +I +DL HL L +Y R
Sbjct: 207 LLSPLEVHTIFTHISSEDLAHLGLNEQYAR 236
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 261 GQGPSCGRSQRRWRLPRWKVLLAGLLPQIPK 353
G+GP CG WR+ W L G++P + +
Sbjct: 645 GKGPGCGFWAPSWRV--WLFFLRGIVPLLER 673
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 472 EPIVTRFNDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDD 645
EP+ N ++ +D+Q + SS + S+ F ++ S +I +KE+ D
Sbjct: 600 EPVSLE-NQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTEIEGIKESFASTD 656
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 319 SFLLDFFLRYLKAPPSSRDSAAWLGQEDEPLTGF 420
S +LD FLR L ++SA WLG E ++ +
Sbjct: 444 SSILDCFLRRLAQLGHYKESAEWLGMAIEKISTY 477
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 532 GTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENI 633
G F+NSS +++I L TLL I + +K +I
Sbjct: 447 GCFENSSLNVQTTSIQILGTLLDIIDVTTVKSSI 480
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 493 NDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKEN---IKEDDLQHLHL 663
N QK+ L D + T + S++ + +I NLK+N I +D+ +H+
Sbjct: 33 NSQKIKRTLTDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHI 92
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -2
Query: 473 SDHRTIPVV*RS----QPARQMNPVSGSSSWPSHAALSRDEGGAFRYLRKKSSKKD 318
SD T+ ++ RS Q +Q+ +G S W HA L G+ +K SS +
Sbjct: 180 SDSATMGIISRSAGLGQNTKQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSE 235
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 191 TTSTPLASPRLLMTPPFNMAV 129
+T TP+ SP+L P+N A+
Sbjct: 37 STKTPINSPKLSSAGPYNQAI 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,085
Number of Sequences: 5004
Number of extensions: 53846
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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