Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16j14f
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 215 4e-56
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 215 4e-56
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 215 4e-56
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 161 4e-40
AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical... 29 4.9
AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein. 29 4.9
Z22176-7|CAA80137.1| 910|Caenorhabditis elegans Hypothetical pr... 28 6.4
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 215 bits (524), Expect = 4e-56
Identities = 109/212 (51%), Positives = 145/212 (68%), Gaps = 11/212 (5%)
Frame = +1
Query: 169 EAKGVEVVKVTDD--HTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFL 342
E + V VV+V +D H+++LN + L ILL +V D YR GKSFLL+FFL
Sbjct: 29 EPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFL 88
Query: 343 RYL----KAPPS----SRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRF-N 495
RYL KA D++ W+ + PL+GF WR G +R T GI++WSEP + + N
Sbjct: 89 RYLTWRSKADKVMGEVELDNSQWMSP-NSPLSGFSWRGGSERDTNGILIWSEPFIMKDKN 147
Query: 496 DQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDDLQHLHLFTEY 675
+++AV+LMDTQG FD+ STV+D +TIFALST++SS+QIYNL +NI+EDDLQHL LFTEY
Sbjct: 148 GEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEY 207
Query: 676 GRLACDDDDEAAFQVLMFLVRDWAYPYQHAFG 771
GRLA +D FQ L+FLVRDW++PY+ FG
Sbjct: 208 GRLALEDSASKPFQSLLFLVRDWSFPYEAEFG 239
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 215 bits (524), Expect = 4e-56
Identities = 109/212 (51%), Positives = 145/212 (68%), Gaps = 11/212 (5%)
Frame = +1
Query: 169 EAKGVEVVKVTDD--HTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFL 342
E + V VV+V +D H+++LN + L ILL +V D YR GKSFLL+FFL
Sbjct: 29 EPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFL 88
Query: 343 RYL----KAPPS----SRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRF-N 495
RYL KA D++ W+ + PL+GF WR G +R T GI++WSEP + + N
Sbjct: 89 RYLTWRSKADKVMGEVELDNSQWMSP-NSPLSGFSWRGGSERDTNGILIWSEPFIMKDKN 147
Query: 496 DQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDDLQHLHLFTEY 675
+++AV+LMDTQG FD+ STV+D +TIFALST++SS+QIYNL +NI+EDDLQHL LFTEY
Sbjct: 148 GEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEY 207
Query: 676 GRLACDDDDEAAFQVLMFLVRDWAYPYQHAFG 771
GRLA +D FQ L+FLVRDW++PY+ FG
Sbjct: 208 GRLALEDSASKPFQSLLFLVRDWSFPYEAEFG 239
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 215 bits (524), Expect = 4e-56
Identities = 109/212 (51%), Positives = 145/212 (68%), Gaps = 11/212 (5%)
Frame = +1
Query: 169 EAKGVEVVKVTDD--HTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFL 342
E + V VV+V +D H+++LN + L ILL +V D YR GKSFLL+FFL
Sbjct: 29 EPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFL 88
Query: 343 RYL----KAPPS----SRDSAAWLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPIVTRF-N 495
RYL KA D++ W+ + PL+GF WR G +R T GI++WSEP + + N
Sbjct: 89 RYLTWRSKADKVMGEVELDNSQWMSP-NSPLSGFSWRGGSERDTNGILIWSEPFIMKDKN 147
Query: 496 DQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDDLQHLHLFTEY 675
+++AV+LMDTQG FD+ STV+D +TIFALST++SS+QIYNL +NI+EDDLQHL LFTEY
Sbjct: 148 GEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEY 207
Query: 676 GRLACDDDDEAAFQVLMFLVRDWAYPYQHAFG 771
GRLA +D FQ L+FLVRDW++PY+ FG
Sbjct: 208 GRLALEDSASKPFQSLLFLVRDWSFPYEAEFG 239
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 161 bits (392), Expect = 4e-40
Identities = 91/197 (46%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
Frame = +1
Query: 199 TDDHTYQLNEDALRMILLRDEVKDLPXXXXXXXXXYRGGKSFLLDFFLRYLKAPPSSRDS 378
T ++LNE AL +L + +R GKSFLL+FFL YL + S+ S
Sbjct: 38 TQPGKFRLNESALNSVLGHSACANKKIVIISVAGAFRKGKSFLLNFFLEYLYSLHKSQQS 97
Query: 379 AA---WLGQEDEPLTGFIWRAGCDRQTTGIVLWSEPI-VTRFNDQKVAVVLMDTQGTFDN 546
+ WL +D L GF WRAG R T GI LW EPI + + AVVLMDTQGTFDN
Sbjct: 98 DSSLEWL-TDDCQLHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAVVLMDTQGTFDN 156
Query: 547 SSTVRDSSTIFALSTLLSSIQIYNLKENIKEDDLQHLHLFTEYGRLACDDDDE--AAFQV 720
+ST + T+FALST++SS+QIYN+ +NI+ED LQHL LF EYGR+A + FQ
Sbjct: 157 NSTYQQCMTVFALSTIVSSVQIYNVVDNIQEDALQHLSLFVEYGRIAMEQPHNFGKPFQQ 216
Query: 721 LMFLVRDWAYPYQHAFG 771
L+F VRD+ ++ FG
Sbjct: 217 LVFCVRDFKNQEEYEFG 233
>AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical
protein Y47D3A.23a protein.
Length = 579
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 466 WSEPIVTRFNDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDD 645
W EPIV R +D++ A+V DN+ ++LST S ++ E + E++
Sbjct: 236 WLEPIVQRISDERTAIVCPMIDSISDNTLAYHGD---WSLSTGGFSWALHFTWEGLSEEE 292
Query: 646 LQHLHLFTEYGR 681
+ T+Y R
Sbjct: 293 QKRRTKPTDYIR 304
>AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein.
Length = 579
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 466 WSEPIVTRFNDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKEDD 645
W EPIV R +D++ A+V DN+ ++LST S ++ E + E++
Sbjct: 236 WLEPIVQRISDERTAIVCPMIDSISDNTLAYHGD---WSLSTGGFSWALHFTWEGLSEEE 292
Query: 646 LQHLHLFTEYGR 681
+ T+Y R
Sbjct: 293 QKRRTKPTDYIR 304
>Z22176-7|CAA80137.1| 910|Caenorhabditis elegans Hypothetical
protein ZK1098.8 protein.
Length = 910
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 466 WSEPIVTR-FNDQKVAVVLMDTQGTFDNSSTVRDSSTIFALSTLLSSIQIYNLKENIKED 642
W + +R F D V VV D + D +T+ + + ++ + L EN+ +
Sbjct: 479 WWQKFASRLFGDSPVKVVGFDMRNDLDAMATIPALKSSMKIEDTKNAFDLKRLAENVCDI 538
Query: 643 DLQHLHLFTEYGRLA 687
D++ L L + +LA
Sbjct: 539 DMEILELPKKTFKLA 553
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,937
Number of Sequences: 27780
Number of extensions: 304407
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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