Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j10f
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   2.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   2.3  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   3.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   4.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   5.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   5.4  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   5.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   7.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   7.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   9.4  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    24   9.4  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    24   9.4  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 12  VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 113
           V  PP+APVA   P V     +     AP VP P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637



 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 9   IVDNPPLAPVADSTPLVQIILNINQASSAPIVPGPG 116
           +V   P  P   + P+V  + ++ Q  + P+VP  G
Sbjct: 657 VVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692



 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 12  VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 113
           V  PP+APVA   P V           AP VP P
Sbjct: 574 VPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQP 607



 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 12  VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 113
           V  PP APV    P V     +     AP VP P
Sbjct: 634 VPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 305 GLRKS-DSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLR 132
           G+R+  ++ CG    R +   GSN S N+SN+        DN++   ND    N+N+   
Sbjct: 490 GIRRHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547

Query: 131 DNGID 117
            N  D
Sbjct: 548 TNTDD 552


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 305 GLRKS-DSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLR 132
           G+R+  ++ CG    R +   GSN S N+SN+        DN++   ND    N+N+   
Sbjct: 490 GIRRHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547

Query: 131 DNGID 117
            N  D
Sbjct: 548 TNTDD 552


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 236 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 129
           GSNV +++  GD + D N  ++++   + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = -3

Query: 242 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQND 63
           S+ SN S  + + DGA+   +G+ +DF  V+    + +N  D  +G+N      V ++ D
Sbjct: 342 SHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNN--DDENGNNESENEEV-IEED 396

Query: 62  LHERSAVSNGGKRRVVYD 9
              R+ ++   + +VV D
Sbjct: 397 NLNRNVIAE-AQNQVVAD 413


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 74 VQNDLHERSAVSNGGKRRVVYDS 6
          + N+L  RS+  +GGK R+  DS
Sbjct: 3  LSNELFHRSSKDHGGKSRICLDS 25


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 293 SDSGCGNDGSRDDHWLGSNGSNVSNLDR--LGDGAIDNNHGLSNDFGFVNDNHGLRDNGI 120
           S++   N  + ++  + S  S++S +    LG    +NN+  SN   + N+N G  +   
Sbjct: 527 SNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQH 586

Query: 119 DTGSGDNRGRAS 84
              S   +G AS
Sbjct: 587 QQSSSSLQGLAS 598


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 200 GAIDNNHGLSNDFGFVNDNHGL 135
           G ID N  +S  FGF+  N GL
Sbjct: 287 GIIDRNILVSRGFGFLKSNSGL 308


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 152 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 36
           ND     D   D GS +   RASL   QN    +S   N
Sbjct: 18  NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   PAIVDNPPLAPVADSTPLVQIILNINQASSAPI 101
           P+++DN P+     + P  +  L+ + A +API
Sbjct: 161 PSVIDNSPVKSKLGALPSARPRLSYSAAQTAPI 193


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 212 RLGDGAIDN-NHGLSNDFGFVND 147
           R+ + AID+ N G+S  FG++ND
Sbjct: 408 RIDNVAIDHLNRGVSGAFGWIND 430


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -1

Query: 361 ERPRAVMVDMSTLIDIQLRVSGRVTAGAGMMGVATITGLG 242
           ++P  +  D   L+D QL    ++ +   ++ ++   GLG
Sbjct: 833 KKPAKLSKDQQALVDAQLDAEAKIRSRVNLIALSLERGLG 872


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 371 FRLRAPESGHGGHVDIDRYSVKGLRKSDSGCGNDGSRD 258
           FR++    G G  +D+++ +V   RK    C    S+D
Sbjct: 148 FRVKNDTIGLGTKIDLEKVAVNKCRKGKRQCQIQHSKD 185


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 361 ERPRAVMVDMSTLIDIQLRVS 299
           +RP A++ DM  L+DI  ++S
Sbjct: 363 DRPMAILKDMLVLLDISKKLS 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,984
Number of Sequences: 5004
Number of extensions: 22725
Number of successful extensions: 80
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)