Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j10f
         (451 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018147-1|AAH18147.1|  666|Homo sapiens Leo1, Paf1/RNA polymera...    31   1.4  
AY302186-1|AAP68819.1|  666|Homo sapiens replicative senescence ...    31   1.4  
AK055762-1|BAB71006.1|  425|Homo sapiens protein ( Homo sapiens ...    31   1.4  
AF094508-1|AAD16120.1|  788|Homo sapiens dentin phosphoryn protein.    29   5.5  
AB051448-1|BAB33331.1|   90|Homo sapiens KIAA1661 protein protein.     29   9.7  

>BC018147-1|AAH18147.1|  666|Homo sapiens Leo1, Paf1/RNA polymerase
           II complex component, homolog (S. cerevisiae) protein.
          Length = 666

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -3

Query: 299 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 123
           + SDSG  +D  +++   GSN S + S+ D  GD    +N  L  D     D      +G
Sbjct: 19  KDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDS--EDEGASHHSG 76

Query: 122 IDTGS--GDNRGRAS 84
            D  S   DNR  AS
Sbjct: 77  SDNHSERSDNRSEAS 91


>AY302186-1|AAP68819.1|  666|Homo sapiens replicative senescence
           downregulated leo1-like protein protein.
          Length = 666

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -3

Query: 299 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 123
           + SDSG  +D  +++   GSN S + S+ D  GD    +N  L  D     D      +G
Sbjct: 19  KDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDS--EDEGASHHSG 76

Query: 122 IDTGS--GDNRGRAS 84
            D  S   DNR  AS
Sbjct: 77  SDNHSERSDNRSEAS 91


>AK055762-1|BAB71006.1|  425|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31200 fis, clone KIDNE2000574, weakly similar to
           Staphylococcus epidermidis putative cell-surface adhesin
           SdrF ).
          Length = 425

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -3

Query: 299 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 123
           + SDSG  +D  +++   GSN S + S+ D  GD    +N  L  D     D      +G
Sbjct: 19  KDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDS--EDEGASHHSG 76

Query: 122 IDTGS--GDNRGRAS 84
            D  S   DNR  AS
Sbjct: 77  SDNHSERSDNRSEAS 91


>AF094508-1|AAD16120.1|  788|Homo sapiens dentin phosphoryn protein.
          Length = 788

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 293 SDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDT 114
           SDS   +DGS  D    SN S+ SN     D +  +N   S+D    N++    D+   +
Sbjct: 380 SDSSDSSDGSDSD---SSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSS 436

Query: 113 GSGDN 99
            S D+
Sbjct: 437 NSSDS 441


>AB051448-1|BAB33331.1|   90|Homo sapiens KIAA1661 protein protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 23/76 (30%), Positives = 30/76 (39%)
 Frame = -3

Query: 290 DSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTG 111
           D G  +DG  D    G  G    + D  GDG  D+      D G+  D+    D+G   G
Sbjct: 3   DGGGCDDGDDDGDDDGGGGDGGGDGDDGGDGGDDDGDHDDGDGGYGGDDGD--DDGDGGG 60

Query: 110 SGDNRGRASLVDVQND 63
            GD+       D  ND
Sbjct: 61  DGDDDDSDDGGDDAND 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,490,917
Number of Sequences: 237096
Number of extensions: 864360
Number of successful extensions: 2116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2115
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)