Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j09f
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    32   0.066
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    31   0.20 
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    28   1.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   5.8  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +1

Query: 238 KAADIDGDGKITQEEWLSLWDKYAQTSTPQEWQDVFCKSLFHVQDSGGDGAIDAEEYSTV 417
           K  D DG+G IT EE   +     +  + +E  D+  ++     D+ GDG I+ EE+S V
Sbjct: 92  KVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA-----DTDGDGVINYEEFSRV 146

Query: 418 QQS 426
             S
Sbjct: 147 ISS 149



 Score = 29.9 bits (64), Expect = 0.35
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 247 DIDGDGKITQEEWLSLWDKYAQTSTPQEWQDVFCKSLFHVQDSGGDGAIDAEEYSTV--Q 420
           D D DG IT  E   +     Q+ T  E QD     + +  D+ G+G ID  E+ T+  +
Sbjct: 22  DRDQDGNITSNELGVVMRSLGQSPTAAELQD-----MINEVDADGNGTIDFTEFLTMMAR 76

Query: 421 QSFGIDKAQAV-EAFK 465
           +    D  + V EAFK
Sbjct: 77  KMKDTDNEEEVREAFK 92


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 238 KAADIDGDGKITQEEWLSLW----DKYAQTSTPQEWQDVFCKSLFHVQDSGG 381
           KA  +D   ++ +EE   +     +KYAQ   P+E  D+  K+   +QDS G
Sbjct: 426 KAVFLDDIMEVAKEEMHKVMQKNEEKYAQVENPEEVADIVGKTAIRIQDSTG 477


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 196 VAKEHLTNIWNGLQKAADIDGDGKITQEEWLSLW--DKYAQTSTPQEWQDVFCKSL 357
           +    L ++ N  +  + +  +G+ T+EE +S+W  D   +  TP E  D F + L
Sbjct: 514 ITTSQLESLRNNTEWISSVAENGEKTEEELISIWLGDAKVELITPSEITDGFEEEL 569


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +1

Query: 88   FFDTDKSGTIEKSDFEKSAEGLAKARGWAPGSPALEVAKEHLTNIWNGLQKAADIDGDGK 267
            FF TDK           +A+    ++ W P S  L   + H T +++GL     +D   +
Sbjct: 763  FFVTDKLRYYSSKILAMTAKTKLTSKNWIPLSGLLFSLRAHDTFMFDGL-----LDRLNE 817

Query: 268  ITQEEWLSLWDK-----YAQTSTPQE 330
             ++ + +S W K     Y+++ST QE
Sbjct: 818  ESRTKLVSSWSKQDAFDYSKSSTHQE 843


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +1

Query: 259 DGKITQEEWLSLWDKYAQTSTPQEWQDVFCKSLFHVQDSGGDGAIDAEEYSTVQQSFGID 438
           D  +T E W+   D+  +  T          SL HV+    D A+ + E S++Q +F + 
Sbjct: 335 DASVT-ENWVHDEDEPDKKITLHSMASAGTSSLDHVKVDADDPAVTSVENSSIQDAFLVF 393

Query: 439 KAQAVEAFKKMAQGK 483
           ++    A ++ +  K
Sbjct: 394 RSMCRLAVRQTSPDK 408


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 477 LSHLFKRLNSLSFIYAKRLLNS*VLFSVDRAIATRVLDVEKA 352
           LSH   R    S +Y + LLNS VL  +D  +A  +  V+KA
Sbjct: 107 LSHCANRSIYNSTVYLEYLLNSSVLEVIDSTLALLLHIVQKA 148


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 266 K*LKKNGCRYGTNTLRLLHLRNGRMFFARAFSTSKTRVAMARSTLKSTQLFN 421
           K  +K  C++G+       L +GR    RAF+ S T +  +   + +  + N
Sbjct: 71  KYFQKGNCKFGSKCALEHVLPDGRKVKTRAFAPSTTAMGSSSQNISAAPMAN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,451
Number of Sequences: 5004
Number of extensions: 46238
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)