Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j08r
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.27 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 231 VSMGLGAGTRCEPVGT 278
           V++G  AG  C+PVGT
Sbjct: 282 VAIGTAAGMMCQPVGT 297


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 257 RAGPEPHGDPEPGCGPKP 204
           +A P  H    PGC PKP
Sbjct: 30  QATPVIHFLQYPGCVPKP 47


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = -1

Query: 260 PRAGPEPHGDPEPGCGPKPRRGAQRPGEDVRRRTQL 153
           P  GP P G P       P +    P   + +  QL
Sbjct: 42  PSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQL 77


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 60  HSGSVTWPQRDRAAFL 107
           H GS +W Q D  A L
Sbjct: 405 HHGSKSWTQEDMDAAL 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,077
Number of Sequences: 438
Number of extensions: 1938
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)