Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j02f
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    31   0.24 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    30   0.32 
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   3.9  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   5.2  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.8  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   9.0  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   9.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.0  

>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 97  FNRNYQYWEKRGVPYEKPFFLFG 165
           F RN Q+++ RG+PY + + L+G
Sbjct: 227 FLRNSQWYDTRGIPYRRGYLLYG 249


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 217 SKRHTGDYVGIFLGFKPTLMVQTPEIARRILVKDNAHFNNRYCYSSYGVD----PLGSLN 384
           S RH G    I +  + TL     ++A ++ V     F   +  +SYG D    P+  L+
Sbjct: 170 SIRHDGQVCNITIAAEETLRQLAQQVAEKMNVSPPTKFTTTFPRASYGTDVFDKPVNQLD 229

Query: 385 LFTVKVNI 408
           LF   V I
Sbjct: 230 LFPSAVLI 237


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 291 FWSLYHKGRFESQKYSNIVTRMPLA 217
           FW L H+GRF  Q+    +  + LA
Sbjct: 391 FWHLQHEGRFPEQRAKFYIAELVLA 415


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 557 HILHNTQAKHK*IYQMYVRKGMQC 486
           H+LH+T   H   YQM + K + C
Sbjct: 116 HLLHHTLGTHDFEYQMEIAKKLTC 139


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 142 EKPFFLFGSLSFILRKSFWDYF-YELSKRHTGDYV 243
           E+P  ++ S SF     FW YF Y LS +   D+V
Sbjct: 90  EQPSLVYPSSSFSSTSKFWRYFAYLLSLQIVIDFV 124


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 208 YELSKRHTGDYVGIFLGFKPTLMVQTPEIARRILVKDNAHFNNR 339
           +E  + H GDY+ I     P   +Q P      +++D  ++N R
Sbjct: 366 HESVEMHRGDYLSIVTSHYPFTTIQNPGYQWTKVLEDKFNWNVR 409


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 622 NITKRHSNFIYMYRLSENNEHTIYYI 545
           N+TKRH   ++M   +E  E   YY+
Sbjct: 230 NLTKRHEVALFMPSSAEGEEFLSYYL 255


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 139  YEKPFFLFGSLSFILRKSFWDYFYELSKRHTGDY 240
            YE P F+   L  +L    W+    LSK +  DY
Sbjct: 1817 YESPIFVSEQLKSLLHSCLWNDTLFLSKLNIMDY 1850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,887
Number of Sequences: 5004
Number of extensions: 75361
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)