Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16j02f
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z81503-3|CAB04113.1|  518|Caenorhabditis elegans Hypothetical pr...    36   0.042
U61945-2|AAB03125.2|  494|Caenorhabditis elegans Hypothetical pr...    34   0.097
Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical pr...    34   0.13 
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    30   1.6  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   2.8  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   2.8  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   4.8  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   4.8  
U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase ...    28   6.4  
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U55365-4|AAA98571.1|  492|Caenorhabditis elegans Cytochrome p450...    28   8.4  
L07143-2|AAB37087.3|  437|Caenorhabditis elegans Protein kinase ...    28   8.4  

>Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 76  LTAIYLLFNRNYQYWEKRGVPYEKPFFLFGSLSFILRKSF-WDYFYELSKRHTGDYVGIF 252
           L +I   +  ++ +W++RG+P      +FG    +L  SF   Y  +   +  G   G  
Sbjct: 7   LISIVTYYFWHWTFWKRRGLPGPWGVPIFGKAGAMLEDSFPPGYTLQKWTKEYGKIYGFT 66

Query: 253 LGFKPTLMVQTPEIARRILVKDNAHFNNR 339
            G +  +++  P++ + ILVK   +F  R
Sbjct: 67  EGMQKVMVISDPDLVQEILVKQYDNFYGR 95


>Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 76  LTAIYLLFNRNYQYWEKRGVPYEKPFFLFGSLSFILRKSF-WDYFYELSKRHTGDYVGIF 252
           L +I   +  ++ +W++RG+P      +FG    +L  SF   Y  +   +  G   G  
Sbjct: 7   LISIVTYYFWHWTFWKRRGLPGPWGVPIFGKAGAMLEDSFPPGYTLQKWTKEYGKIYGFT 66

Query: 253 LGFKPTLMVQTPEIARRILVKDNAHFNNR 339
            G +  +++  P++ + ILVK   +F  R
Sbjct: 67  EGMQKVMVISDPDLVQEILVKQYDNFYGR 95


>Z81503-3|CAB04113.1|  518|Caenorhabditis elegans Hypothetical
           protein F14F7.3 protein.
          Length = 518

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 109 YQYWEKRGVPYEKPFFLFGSLSFILRKSFWDYFY--ELSKRHTGDYVGIFLGFKPTLMVQ 282
           + YW++RG+     + + GS   +L      Y    E +K++ G   GI  G   TL++ 
Sbjct: 23  WSYWKRRGIAGPSGYPILGSALEMLSSENPPYLQLKEWTKQY-GKVYGITEGLSRTLVIS 81

Query: 283 TPEIARRILVKDNAHFNNR 339
            P++ + + VK   +F  R
Sbjct: 82  DPDLVQEVFVKQYDNFFGR 100


>U61945-2|AAB03125.2|  494|Caenorhabditis elegans Hypothetical
           protein C49C8.4 protein.
          Length = 494

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +1

Query: 76  LTAIYLLFNRNYQYWEKRGVPYEK-PFFLFGSLSFILRKSFWDY-FYELSKRHTGDYVGI 249
           LT+I +++  N+ YW++R +P    P  + G+L  +       Y  YE  K   G     
Sbjct: 6   LTSILIIYLFNHFYWKRRKLPPGPIPLPIIGNLYLMTEDVKPGYKMYEKLKDKYGPVFTF 65

Query: 250 FLGFKPTLMVQTPEIARRILVKDNAHFNNR 339
           +L   P + V   ++ ++  +KD A+F  R
Sbjct: 66  WLANLPMVTVTDWKLIKQHFIKDGANFVGR 95


>Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical
           protein ZK1320.4 protein.
          Length = 519

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 109 YQYWEKRGVPYEKPFFLFGSLSFILRKSFWDYFY--ELSKRHTGDYVGIFLGFKPTLMVQ 282
           + YW +RG+P    + L GS    L+  +  Y    + +K + G   G   G   TL+V 
Sbjct: 23  WTYWRRRGIPGPLGYPLVGSFPKTLKSEYPQYLQIRDWTKLY-GPIYGYTEGTIKTLIVS 81

Query: 283 TPEIARRILVKDNAHFNNR 339
             +I R+I V+   +F  R
Sbjct: 82  DIDIVRQIFVEQYDNFYGR 100


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/85 (23%), Positives = 44/85 (51%)
 Frame = -1

Query: 456 LIYIGIRT*ALYTLKFNIYLYCKQI*GAQWIHAVRRITVSVVEMGIVLDQDTTRYFWSLY 277
           L+Y+G  + +LY + + +++Y K   G Q++     I  S + + I++ +   +++ S+ 
Sbjct: 278 LVYLGDVSYSLYLIHWPVFVYVKHYYGEQFLVYFLAIIFSTL-LAIIMSETYEKWYLSI- 335

Query: 276 HKGRFESQKYSNIVTRMPLA*FVEI 202
             G+FE      I+  + +A  V I
Sbjct: 336 --GKFEILSLIGILYMLVIAIVVNI 358


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 667 YVPYIHMHVVKSGYFNITKRHSNFIYMYRLSENNEHTIYYIIHKQSINKYIKCTYVRECN 488
           Y+P + + +V +  ++IT RHS      + +E  +HT+  +  + S N+     Y  E N
Sbjct: 188 YIPVVILIIVYAKIYSITIRHSR--QRLKETERRDHTLNMLTIRSSTNERYNMEYELEEN 245


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 667 YVPYIHMHVVKSGYFNITKRHSNFIYMYRLSENNEHTIYYIIHKQSINKYIKCTYVRECN 488
           Y+P + + +V +  ++IT RHS      + +E  +HT+  +  + S N+     Y  E N
Sbjct: 188 YIPVVILIIVYAKIYSITIRHSR--QRLKETERRDHTLNMLTIRSSTNERYNMEYELEEN 245


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 476 CFENIAFPYVRTFDIFIYALLVYYVVYGMFIIL 574
           CF    FPY       +Y LL + +V G ++++
Sbjct: 479 CFTGFKFPYRSVLSHLLYVLLPHVLVQGRYVLI 511


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 476 CFENIAFPYVRTFDIFIYALLVYYVVYGMFIIL 574
           CF    FPY       +Y LL + +V G ++++
Sbjct: 479 CFTGFKFPYRSVLSHLLYVLLPHVLVQGRYVLI 511


>U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase
           protein 26 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 210 RTKQEAYG*LCWNIFGIQTDPY 275
           +T   AYG LCW IF    +PY
Sbjct: 309 KTDVWAYGVLCWEIFNNAAEPY 330


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 82  AIYLLFNRNYQYWEKRGVPYEK--PFFLFGS--LSFILRKSFWDYFYELSKRHTG 234
           A+YLL    Y YW+   V Y++   F L  S  L+ I+ ++F  ++  LS    G
Sbjct: 302 ALYLLHWPIYSYWKLNWVQYDQLLIFVLLSSIILAVIVHETFEKWYLNLSSTSVG 356


>U55365-4|AAA98571.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 33A1 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +1

Query: 76  LTAIYLLFNRNYQYWEKRGVPYEK-PFFLFGSLSFILRKSFWDYFYELSKRHTGDYVGIF 252
           LTA ++L+  N  YW++RG+P    P  + G++  +         Y+   +  G    ++
Sbjct: 7   LTA-FVLYLFNEFYWKRRGLPPGPIPLPIIGNMIELFSYPPPTAAYDAWTKKFGKIYTVW 65

Query: 253 LGFKPTLMVQTPEIARRILVKDNAHFNNRYCYS 351
           +G  P +++   +  +   V D   + ++  YS
Sbjct: 66  MGTDPAVIITGYKELKDTFVNDGHSYLDKMIYS 98


>L07143-2|AAB37087.3|  437|Caenorhabditis elegans Protein kinase
           protein 31 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 210 RTKQEAYG*LCWNIFGIQTDPY 275
           +T   AYG LCW IF    +PY
Sbjct: 302 KTDVWAYGILCWEIFNNGAEPY 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,862
Number of Sequences: 27780
Number of extensions: 401808
Number of successful extensions: 1063
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)