Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i24f
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    94   1e-20
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   4.4  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   5.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.7  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
 Frame = +1

Query: 235 VQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEKV------KLDXXXXXXXXXXXXX 396
           V YC  C++P+EYCE+     KCK+WL+ + P  ++K+        D             
Sbjct: 12  VLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTLNVSGTKDS 71

Query: 397 XXXXXXXMLKSKKK----EDVPKL---VQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKF 555
                   L  ++K    E+  ++   V +    R K+K VT V GL  F I+ K AAK 
Sbjct: 72  NAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKM 131

Query: 556 FGTKFACGSSVT----GDDEIVIQGDVKDDLFDIIPEKWPEIDEDS 681
              KFA G+SVT      DEIV+QGD+  D+FD I EK+ E+ ED+
Sbjct: 132 LANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFKEVPEDN 177


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 102 IKNFYFFYCYSLGRISFDFFLFI 34
           +K+FYF Y   +  +SFD  LF+
Sbjct: 186 LKSFYFKYIQIIEALSFDALLFV 208


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 536 RSISKVLNPDTTVTDFFLPRGARDTCTNLGTSSFFLDFN 420
           RS  +V+NP+ +VTD   P G  +     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 675  FINFWPLFRYDIKKIIFNITLN 610
            F+NF PLFR    K+I+N+ LN
Sbjct: 965  FVNFVPLFR----KVIWNLLLN 982


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,202
Number of Sequences: 5004
Number of extensions: 40740
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)