Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16i21r
(840 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 34 0.002
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.28
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 25 1.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 25 1.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 25 1.1
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 24 1.5
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 24 1.5
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 24 1.5
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 24 1.5
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 3.5
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 6.1
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 6.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 6.1
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 22 8.1
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 22 8.1
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 8.1
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 33.9 bits (74), Expect = 0.002
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = -2
Query: 419 RQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLVS 246
++ +L ++T C + +GN I+ + +C + G+ C DSGGP+ + +++LV+
Sbjct: 311 QKTTLNMLTQVECYKYYGN--IMVNAMCAY-AKGKDACQMDSGGPVLWQNPRTKRLVN 365
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.6 bits (56), Expect = 0.28
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = -1
Query: 672 HNDVAIINHNHVGFTSQYHYLFNYNQSF*SSYTSNVILSTSPHYRQHPAHQP 517
H+ + H+H + H+ + + SSY + + + +PH+ HP P
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAH-SSYPAAIQIGHTPHHHPHPPETP 473
Score = 25.0 bits (52), Expect = 0.87
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -1
Query: 609 FNYNQSF*SSYTSNVILSTSPHYRQHPAHQPSQWKQQLCWYLGLGCRLR------KDLRC 448
FN +S + IL + H+R H+ S+W + + Y L C LR K+ R
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTHEMSEWVKVVFLY-WLPCILRMSRPSDKEERE 356
Query: 447 CFGSQQPTKTPSEPPGHYQRRLR 379
SQ+P+ H LR
Sbjct: 357 AQKSQKPSPVTGASKSHGDLELR 379
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 760 SEGELTSLGSPGPPAMSGGHG 822
+E T+ +PGPP + G HG
Sbjct: 322 AESMKTARENPGPPGVPGDHG 342
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 760 SEGELTSLGSPGPPAMSGGHG 822
+E T+ +PGPP + G HG
Sbjct: 322 AESMKTARENPGPPGVPGDHG 342
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 760 SEGELTSLGSPGPPAMSGGHG 822
+E T+ +PGPP + G HG
Sbjct: 261 AESMKTARENPGPPGVPGDHG 281
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 693 SYNMDTLHNDVAIINHNHVGFTSQYHYLFNY 601
S + +T+HN+ N+N+ + + +Y NY
Sbjct: 84 SLSNNTIHNNNYKYNYNNNNYNKKLYYNINY 114
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 693 SYNMDTLHNDVAIINHNHVGFTSQYHYLFNY 601
S + +T+HN+ N+N+ + + +Y NY
Sbjct: 84 SLSNNTIHNNNYKYNYNNNNYNKKLYYNINY 114
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 693 SYNMDTLHNDVAIINHNHVGFTSQYHYLFNY 601
S + +T+HN+ N+N+ + + +Y NY
Sbjct: 84 SLSNNTIHNNNYKYNYNNNNYNKKLYYNINY 114
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 693 SYNMDTLHNDVAIINHNHVGFTSQYHYLFNY 601
S + +T+HN+ N+N+ + + +Y NY
Sbjct: 84 SLSNNTIHNNNYKYNYNNNNYNKKLYYNINY 114
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 23.0 bits (47), Expect = 3.5
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -1
Query: 804 CWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSY--NMDTLHNDVAIINHNHVGF 631
CW TR+ Q +GT+N+ + V +++++ Y N+ L N +A+ + +
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL----SLVFPNDIKVDHEYDQNVWVLSNKLAMYLYGSIDS 514
Query: 630 TSQYHYLFNYN 598
+ + +F N
Sbjct: 515 SKINYRIFKAN 525
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 6.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -1
Query: 684 MDTLHNDVAIINHNHVGFTSQYHYLFNYNQSF*SSYTSNVI 562
+ +L N+ N+N+ +Y NYN ++ Y + +I
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 6.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -1
Query: 684 MDTLHNDVAIINHNHVGFTSQYHYLFNYNQSF*SSYTSNVI 562
+ +L N+ N+N+ +Y NYN ++ Y + +I
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.2 bits (45), Expect = 6.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Frame = +1
Query: 724 PGAS---GEDVSCAKSEGELTSLGSPG-----PPAMSG 813
PG S GE S A ++G T+ SPG PA SG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSG 930
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 21.8 bits (44), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 8 RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 109
RQ N + GV+GCD GR ++ ERC
Sbjct: 101 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 133
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 21.8 bits (44), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 8 RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 109
RQ N + GV+GCD GR ++ ERC
Sbjct: 102 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 134
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 8.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 439 EPTTNKNAK*ASRS 398
EP TNKN K SRS
Sbjct: 239 EPGTNKNGKFFSRS 252
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,932
Number of Sequences: 438
Number of extensions: 4550
Number of successful extensions: 30
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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