Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i21f
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    30   0.30 
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    28   1.6  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.8  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.7  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   3.7  

>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 679 KSSLRYEKNKKNLLEKCANSRRVPAGGY 596
           K  +RYEK KK L  K A  +  P GGY
Sbjct: 552 KKRMRYEKAKKKLASKKAIYKGAPQGGY 579


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 244 TYKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLGPGDTDLDV 119
           T K+G+  +   R   +   + +  FL  S ++GPG T+LD+
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNLDI 361


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 694 RQCDHKSSLRYEKNKKNLLEKCANSRRVPAGGYTSPT-LLWTN 569
           ++ D K+SL  E  +KN LE    ++     G  SPT   W N
Sbjct: 549 KETDKKNSLVNEAEEKNDLEAIEAAKNFHVNGKPSPTRFAWVN 591


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 522 YSVRCVHVSIAGSITVLVQRRVGD--VYPPAGTLRLLAHFSNRFFLFFSYRRLDL*SH*R 695
           + V C+ VSI  ++TVL+   +    +    G +  L + +N   L FS+R     S   
Sbjct: 389 FVVSCIFVSIFDTLTVLLLTWINPYVINSHTGLILALFYLTNLIALAFSFRAAATHSKLS 448

Query: 696 MAELPSAELPY 728
             +L S E+ +
Sbjct: 449 SEDLSSIEIVF 459


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 655 NKKNLLEKCANSRRVPAGGYTS 590
           N +N LE CANSR  P G   S
Sbjct: 131 NTENGLENCANSRFAPGGDIDS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,335
Number of Sequences: 5004
Number of extensions: 49806
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)